use cases
In this repo, we present a full example of the metaGOflow pipeline using actual EMO BON sequence data.
Marine sediment
Quality control
metaGOflow invokes fastp that automatically returns a .html report like the one below for the case of this marine sediment sample:
Taxonomic inventory
metaGOflow uses the mapSEQ to extract taxa present on the community based on the ribosomal RNA sequences.
Here is the krona plot metaGOflow returns as a visual component of the community structure.
Functional annotation
metaGOflow supports a functional annotation step that uses the filtered reads and a series of tools and databases to return several types of annotations.
InterProScan (IPS)
On the first column we get the number of hits an id had among the reads, on the second the IPS id and on the third its description.
| 115018 | IPR003439 | ABC transporter-like, ATP-binding domain |
| 111468 | IPR001789 | Signal transduction response regulator, receiver domain |
| 73852 | IPR000917 | Sulfatase, N-terminal |
| 71296 | IPR001036 | Acriflavin resistance protein |
| 65050 | IPR000719 | Protein kinase domain |
| 59116 | IPR015590 | Aldehyde dehydrogenase domain |
| 54482 | IPR002347 | Short-chain dehydrogenase/reductase SDR |
| 53966 | IPR000873 | AMP-dependent synthetase/ligase |
| 49167 | IPR002078 | RNA polymerase sigma factor 54 interaction domain |
| 47369 | IPR000160 | GGDEF domain |
| 45726 | IPR019734 | Tetratricopeptide repeat |
| 45391 | IPR003594 | Histidine kinase/HSP90-like ATPase |
| 43947 | IPR013517 | FG-GAP repeat |
| 40889 | IPR001633 | EAL domain |
| 39522 | IPR010869 | Protein of unknown function DUF1501 |
| 38792 | IPR000515 | ABC transporter type 1, transmembrane domain MetI-like |
| 34853 | IPR017896 | 4Fe-4S ferredoxin-type, iron-sulphur binding domain |
| 32564 | IPR020846 | Major facilitator superfamily domain |
| 31968 | IPR005467 | Histidine kinase domain |
| 31267 | IPR004839 | Aminotransferase, class I/classII |
| 26670 | IPR003959 | ATPase, AAA-type, core |
| 26520 | IPR000847 | Transcription regulator HTH, LysR |
| 26211 | IPR005814 | Aminotransferase class-III |
| 25372 | IPR001482 | Type II/IV secretion system protein |
| 25170 | IPR000014 | PAS domain |
| 24693 | IPR001173 | Glycosyltransferase 2-like |
| 24069 | IPR001753 | Enoyl-CoA hydratase/isomerase |
| 24026 | IPR000795 | Translational (tr)-type GTP-binding domain |
| 24012 | IPR003661 | Signal transduction histidine kinase, dimerisation/phosphoacceptor domain |
| 23650 | IPR001434 | Large cysteine-rich periplasmic protein OmcB-like, DUF11 domain |
| 23324 | IPR002300 | Aminoacyl-tRNA synthetase, class Ia |
| 22866 | IPR000182 | GNAT domain |
| 22533 | IPR000644 | CBS domain |
| 22485 | IPR000192 | Aminotransferase class V domain |
| 22307 | IPR001509 | NAD-dependent epimerase/dehydratase |
| 21698 | IPR007627 | RNA polymerase sigma-70 region 2 |
| 21628 | IPR009075 | Acyl-CoA dehydrogenase/oxidase C-terminal |
| 21500 | IPR010221 | VCBS repeat |
| 21452 | IPR013126 | Heat shock protein 70 family |
| 21086 | IPR001734 | Sodium/solute symporter |
| 21071 | IPR017932 | Glutamine amidotransferase type 2 domain |
| 21051 | IPR001867 | OmpR/PhoB-type DNA-binding domain |
| 21018 | IPR005119 | LysR, substrate-binding |
| 20979 | IPR000277 | Cys/Met metabolism, pyridoxal phosphate-dependent enzyme |
| 20440 | IPR011527 | ABC transporter type 1, transmembrane domain |
| 20355 | IPR017900 | 4Fe-4S ferredoxin, iron-sulphur binding, conserved site |
| 20188 | IPR011659 | WD40-like beta propeller |
| 19818 | IPR010656 | TRAP C4-dicarboxylate transport system permease DctM subunit |
| 19648 | IPR001680 | WD40 repeat |
| 19178 | IPR006665 | OmpA-like domain |
| 19175 | IPR003673 | CoA-transferase family III |
| 19033 | IPR001650 | Helicase, C-terminal |
| 18783 | IPR001750 | NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit |
| 18745 | IPR011444 | Domain of unknown function DUF1549 |
| 18661 | IPR023753 | FAD/NAD(P)-binding domain |
| 18449 | IPR006680 | Amidohydrolase-related |
| 18266 | IPR022655 | Domain of unknown function DUF1553 |
| 18130 | IPR040853 | RapA2, cadherin-like domain |
| 18015 | IPR022028 | Protein of unknown function DUF3604 |
| 18007 | IPR011545 | DEAD/DEAH box helicase domain |
| 17898 | IPR014001 | Helicase superfamily 1/2, ATP-binding domain |
| 17621 | IPR018060 | DNA binding HTH domain, AraC-type |
| 17618 | IPR006656 | Molybdopterin oxidoreductase |
| 17449 | IPR002372 | Pyrrolo-quinoline quinone repeat |
| 17375 | IPR003953 | FAD-dependent oxidoreductase 2, FAD binding domain |
| 17161 | IPR011251 | Luciferase-like domain |
| 17143 | IPR002104 | Integrase, catalytic domain |
| 17027 | IPR018247 | EF-Hand 1, calcium-binding site |
| 16908 | IPR000653 | DegT/DnrJ/EryC1/StrS aminotransferase |
| 16492 | IPR016040 | NAD(P)-binding domain |
| 16408 | IPR001279 | Metallo-beta-lactamase |
| 16388 | IPR001296 | Glycosyl transferase, family 1 |
| 16353 | IPR001926 | Pyridoxal-phosphate dependent enzyme |
| 16246 | IPR009056 | Cytochrome c-like domain |
| 16226 | IPR000883 | Cytochrome c oxidase subunit I |
| 16173 | IPR005479 | Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain |
| 15763 | IPR001584 | Integrase, catalytic core |
| 15715 | IPR001763 | Rhodanese-like domain |
| 15708 | IPR001030 | Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain |
| 15665 | IPR013786 | Acyl-CoA dehydrogenase/oxidase, N-terminal |
| 15551 | IPR020616 | Thiolase, N-terminal |
| 15375 | IPR001466 | Beta-lactamase-related |
| 15270 | IPR034733 | Acetyl-CoA carboxylase |
| 15259 | IPR041690 | Cadherin-like domain |
| 15190 | IPR008271 | Serine/threonine-protein kinase, active site |
| 15169 | IPR003660 | HAMP domain |
| 15074 | IPR001375 | Peptidase S9, prolyl oligopeptidase, catalytic domain |
| 15062 | IPR017926 | Glutamine amidotransferase |
| 14979 | IPR014030 | Beta-ketoacyl synthase, N-terminal |
| 14786 | IPR014018 | SecA motor DEAD |
| 14563 | IPR001343 | RTX calcium-binding nonapeptide repeat |
| 14438 | IPR012902 | Prokaryotic N-terminal methylation site |
| 14208 | IPR003029 | S1 domain |
| 14106 | IPR006076 | FAD dependent oxidoreductase |
| 14091 | IPR000073 | Alpha/beta hydrolase fold-1 |
| 13853 | IPR001647 | DNA-binding HTH domain, TetR-type |
| 13797 | IPR003423 | Outer membrane efflux protein |
| 13597 | IPR004364 | Aminoacyl-tRNA synthetase, class II (D/K/N) |
| 13588 | IPR003010 | Carbon-nitrogen hydrolase |
| 13559 | IPR005835 | Nucleotidyl transferase domain |
| 13394 | IPR013216 | Methyltransferase type 11 |
| 13325 | IPR012910 | TonB-dependent receptor, plug domain |
| 13238 | IPR028971 | NAD-glutamate dehydrogenase |
| 13132 | IPR006073 | GTP binding domain |
| 13063 | IPR006099 | Methylmalonyl-CoA mutase, alpha/beta chain, catalytic |
| 13043 | IPR006140 | D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain |
| 12954 | IPR023210 | NADP-dependent oxidoreductase domain |
| 12951 | IPR006685 | Mechanosensitive ion channel MscS |
| 12873 | IPR013249 | RNA polymerase sigma factor 70, region 4 type 2 |
| 12863 | IPR000209 | Peptidase S8/S53 domain |
| 12783 | IPR005532 | Sulfatase-modifying factor enzyme |
| 12764 | IPR000914 | Solute-binding protein family 5 domain |
| 12641 | IPR000700 | PAS-associated, C-terminal |
| 12624 | IPR000194 | ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain |
| 12572 | IPR005475 | Transketolase-like, pyrimidine-binding domain |
| 12517 | IPR002932 | Glutamate synthase domain |
| 12498 | IPR000531 | TonB-dependent receptor-like, beta-barrel |
| 12495 | IPR025110 | AMP-binding enzyme, C-terminal domain |
| 12491 | IPR003838 | ABC3 transporter permease protein domain |
| 12476 | IPR001460 | Penicillin-binding protein, transpeptidase |
| 12404 | IPR006222 | Aminomethyltransferase, folate-binding domain |
| 12238 | IPR007197 | Radical SAM |
| 12230 | IPR004089 | Methyl-accepting chemotaxis protein (MCP) signalling domain |
| 12225 | IPR001991 | Sodium:dicarboxylate symporter |
| 12215 | IPR000683 | Gfo/Idh/MocA-like oxidoreductase, N-terminal |
| 12193 | IPR000595 | Cyclic nucleotide-binding domain |
| 12167 | IPR020845 | AMP-binding, conserved site |
| 12165 | IPR001463 | Sodium:alanine symporter |
| 12022 | IPR037523 | Vicinal oxygen chelate (VOC) domain |
| 11936 | IPR022761 | Fumarate lyase, N-terminal |
| 11855 | IPR001054 | Adenylyl cyclase class-3/4/guanylyl cyclase |
| 11846 | IPR023631 | Amidase signature domain |
| 11778 | IPR002528 | Multi antimicrobial extrusion protein |
| 11764 | IPR011766 | Thiamine pyrophosphate enzyme, C-terminal TPP-binding |
| 11689 | IPR020058 | Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain |
| 11630 | IPR001986 | Enolpyruvate transferase domain |
| 11572 | IPR014016 | UvrD-like helicase, ATP-binding domain |
| 11548 | IPR011701 | Major facilitator superfamily |
| 11519 | IPR001078 | 2-oxoacid dehydrogenase acyltransferase, catalytic domain |
| 11494 | IPR037522 | HD-GYP domain |
| 11327 | IPR023616 | Cytochrome c oxidase-like, subunit I domain |
| 11294 | IPR008146 | Glutamine synthetase, catalytic domain |
| 11212 | IPR001962 | Asparagine synthase |
| 11168 | IPR000788 | Ribonucleotide reductase large subunit, C-terminal |
| 11164 | IPR024084 | Isopropylmalate dehydrogenase-like domain |
| 11145 | IPR000060 | BCCT transporter family |
| 11139 | IPR000581 | Dihydroxy-acid/6-phosphogluconate dehydratase |
| 11074 | IPR020904 | Short-chain dehydrogenase/reductase, conserved site |
| 10977 | IPR006016 | UspA |
| 10969 | IPR000792 | Transcription regulator LuxR, C-terminal |
| 10924 | IPR000994 | Peptidase M24 |
| 10702 | IPR002020 | Citrate synthase |
| 10588 | IPR024607 | Sulfatase, conserved site |
| 10554 | IPR001048 | Aspartate/glutamate/uridylate kinase |
| 10506 | IPR002205 | DNA topoisomerase, type IIA, domain A |
| 10412 | IPR000121 | PEP-utilising enzyme, C-terminal |
| 10400 | IPR013154 | Alcohol dehydrogenase, N-terminal |
| 10395 | IPR011703 | ATPase, AAA-3 |
| 10354 | IPR017441 | Protein kinase, ATP binding site |
| 10330 | IPR001017 | Dehydrogenase, E1 component |
| 10313 | IPR008274 | Aldehyde oxidase/xanthine dehydrogenase, first molybdopterin binding domain |
| 10295 | IPR006153 | Cation/H+ exchanger |
| 10293 | IPR018076 | Type II secretion system protein GspF domain |
| 10281 | IPR018389 | TRAP transporter solute receptor DctP |
| 10203 | IPR000089 | Biotin/lipoyl attachment |
| 10150 | IPR000866 | Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant |
| 10142 | IPR000620 | EamA domain |
| 10127 | IPR006311 | Twin-arginine translocation pathway, signal sequence |
| 10111 | IPR011547 | SLC26A/SulP transporter domain |
| 10103 | IPR001851 | ABC transporter, permease |
| 10102 | IPR000891 | Pyruvate carboxyltransferase |
| 10090 | IPR011764 | Biotin carboxylation domain |
| 10073 | IPR000086 | NUDIX hydrolase domain |
| 10037 | IPR000489 | Pterin-binding domain |
| 10017 | IPR001387 | Cro/C1-type helix-turn-helix domain |
| 9932 | IPR011763 | Acetyl-coenzyme A carboxyltransferase, C-terminal |
| 9915 | IPR039562 | Membrane fusion protein, biotin-lipoyl like domain |
| 9907 | IPR046867 | Aldehyde oxidase/xanthine dehydrogenase, second molybdopterin binding domain |
| 9891 | IPR026444 | Secretion system C-terminal sorting domain |
| 9888 | IPR006091 | Acyl-CoA oxidase/dehydrogenase, middle domain |
| 9877 | IPR006218 | DAHP synthetase I/KDSA |
| 9871 | IPR001638 | Solute-binding protein family 3/N-terminal domain of MltF |
| 9824 | IPR024041 | Ammonium transporter AmtB-like domain |
| 9823 | IPR001347 | SIS domain |
| 9782 | IPR004045 | Glutathione S-transferase, N-terminal |
| 9703 | IPR012001 | Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain |
| 9667 | IPR011762 | Acetyl-coenzyme A carboxyltransferase, N-terminal |
| 9615 | IPR001478 | PDZ domain |
| 9587 | IPR013108 | Amidohydrolase 3 |
| 9569 | IPR013766 | Thioredoxin domain |
| 9560 | IPR009081 | Phosphopantetheine binding ACP domain |
| 9547 | IPR001182 | Probable peptidoglycan glycosyltransferase FtsW/RodA |
| 9469 | IPR017941 | Rieske [2Fe-2S] iron-sulphur domain |
| 9447 | IPR025944 | Sigma-54 interaction domain, conserved site |
| 9364 | IPR001451 | Hexapeptide repeat |
| 9357 | IPR000601 | PKD domain |
| 9310 | IPR022488 | Polyphosphate kinase-2-related |
| 9299 | IPR002305 | Aminoacyl-tRNA synthetase, class Ic |
| 9292 | IPR006176 | 3-hydroxyacyl-CoA dehydrogenase, NAD binding |
| 9278 | IPR039429 | Serine hydroxymethyltransferase-like domain |
| 9273 | IPR006171 | TOPRIM domain |
| 9203 | IPR018164 | Alanyl-tRNA synthetase, class IIc, N-terminal |
| 9067 | IPR002197 | DNA binding HTH domain, Fis-type |
| 8995 | IPR000897 | Signal recognition particle, SRP54 subunit, GTPase domain |
| 8963 | IPR002912 | ACT domain |
| 8941 | IPR011453 | Protein of unknown function DUF1559 |
| 8932 | IPR015890 | Chorismate-utilising enzyme, C-terminal |
| 8884 | IPR013221 | Mur ligase, central |
| 8839 | IPR013149 | Alcohol dehydrogenase-like, C-terminal |
| 8685 | IPR003692 | Hydantoinase B/oxoprolinase |
| 8666 | IPR011761 | ATP-grasp fold |
| 8654 | IPR001670 | Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA |
| 8637 | IPR006674 | HD domain |
| 8634 | IPR006145 | Pseudouridine synthase, RsuA/RluA-like |
| 8490 | IPR003667 | NqrDE/RnfAE |
| 8486 | IPR011611 | Carbohydrate kinase PfkB |
| 8479 | IPR014284 | RNA polymerase sigma-70 like domain |
| 8461 | IPR014031 | Beta-ketoacyl synthase, C-terminal |
| 8452 | IPR008915 | Peptidase M50 |
| 8444 | IPR021135 | Phosphoenolpyruvate carboxylase |
| 8422 | IPR015413 | Methionyl/Leucyl tRNA synthetase |
| 8369 | IPR019546 | Twin-arginine translocation pathway, signal sequence, bacterial/archaeal |
| 8360 | IPR002110 | Ankyrin repeat |
| 8356 | IPR004436 | Isocitrate dehydrogenase NADP-dependent, monomeric |
| 8267 | IPR011708 | Bacterial DNA polymerase III, alpha subunit, NTPase domain |
| 8265 | IPR004131 | Pyrophosphate-energised proton pump |
| 8194 | IPR007120 | DNA-directed RNA polymerase, subunit 2, hybrid-binding domain |
| 8180 | IPR002933 | Peptidase M20 |
| 8165 | IPR002130 | Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain |
| 8131 | IPR002898 | MotA/TolQ/ExbB proton channel |
| 8123 | IPR005474 | Transketolase, N-terminal |
| 8083 | IPR020617 | Thiolase, C-terminal |
| 8067 | IPR001114 | Adenylosuccinate synthetase |
| 8063 | IPR002692 | Penicillin/GL-7-ACA/AHL/aculeacin-A acylase |
| 8027 | IPR014017 | UvrD-like DNA helicase, C-terminal |
| 8025 | IPR035587 | DUS-like, FMN-binding domain |
| 8001 | IPR018511 | Hemolysin-type calcium-binding conserved site |
| 7961 | IPR006047 | Glycosyl hydrolase, family 13, catalytic domain |
| 7940 | IPR010281 | Protein of unknown function DUF885 |
| 7929 | IPR004360 | Glyoxalase/fosfomycin resistance/dioxygenase domain |
| 7913 | IPR015793 | Pyruvate kinase, barrel |
| 7905 | IPR001106 | Aromatic amino acid lyase |
| 7870 | IPR000253 | Forkhead-associated (FHA) domain |
| 7842 | IPR001107 | Band 7 domain |
| 7831 | IPR019775 | WD40 repeat, conserved site |
| 7828 | IPR003362 | Bacterial sugar transferase |
| 7809 | IPR011110 | Two component regulator propeller |
| 7769 | IPR007484 | Peptidase M28 |
| 7751 | IPR041698 | Methyltransferase domain 25 |
| 7731 | IPR001915 | Peptidase M48 |
| 7725 | IPR016047 | Peptidase M23 |
| 7725 | IPR011115 | SecA DEAD-like, N-terminal |
| 7699 | IPR011650 | Peptidase M20, dimerisation domain |
| 7695 | IPR004338 | Ion-translocating oxidoreductase NqrB/RnfD |
| 7689 | IPR001155 | NADH:flavin oxidoreductase/NADH oxidase, N-terminal |
| 7636 | IPR004846 | Type II/III secretion system |
| 7624 | IPR012938 | Glucose/Sorbosone dehydrogenase |
| 7599 | IPR001093 | IMP dehydrogenase/GMP reductase |
| 7569 | IPR025667 | SprB repeat |
| 7465 | IPR010496 | 3-keto-disaccharide hydrolase |
| 7444 | IPR006115 | 6-phosphogluconate dehydrogenase, NADP-binding |
| 7436 | IPR002035 | von Willebrand factor, type A |
| 7424 | IPR006094 | FAD linked oxidase, N-terminal |
| 7412 | IPR001567 | Peptidase M3A/M3B catalytic domain |
| 7381 | IPR025943 | Sigma-54 interaction domain, ATP-binding site 2 |
| 7366 | IPR000522 | ABC transporter, permease protein, BtuC-like |
| 7341 | IPR040131 | MnmG, N-terminal domain |
| 7321 | IPR003367 | Thrombospondin, type 3-like repeat |
| 7320 | IPR002220 | DapA-like |
| 7291 | IPR003148 | Regulator of K+ conductance, N-terminal |
| 7290 | IPR002123 | Phospholipid/glycerol acyltransferase |
| 7274 | IPR000559 | Formate-tetrahydrofolate ligase, FTHFS |
| 7236 | IPR003726 | Homocysteine-binding domain |
| 7229 | IPR013497 | DNA topoisomerase, type IA, central |
| 7229 | IPR001128 | Cytochrome P450 |
| 7218 | IPR006195 | Aminoacyl-tRNA synthetase, class II |
| 7203 | IPR001041 | 2Fe-2S ferredoxin-type iron-sulfur binding domain |
| 7157 | IPR001932 | PPM-type phosphatase-like domain |
| 7145 | IPR001672 | Phosphoglucose isomerase (PGI) |
| 7140 | IPR002192 | Pyruvate phosphate dikinase, AMP/ATP-binding |
| 7091 | IPR005151 | Tail specific protease |
| 7075 | IPR004099 | Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain |
| 7060 | IPR000640 | Elongation factor EFG, domain V-like |
| 7015 | IPR006062 | Histidine biosynthesis protein |
| 6973 | IPR018392 | LysM domain |
| 6927 | IPR000819 | Peptidase M17, leucyl aminopeptidase, C-terminal |
| 6916 | IPR001098 | DNA-directed DNA polymerase, family A, palm domain |
| 6912 | IPR018461 | Na+/H+ antiporter, NhaC-like, C-terminal |
| 6864 | IPR000760 | Inositol monophosphatase-like |
| 6842 | IPR004113 | FAD-linked oxidase, C-terminal |
| 6803 | IPR011234 | Fumarylacetoacetase-like, C-terminal |
| 6802 | IPR011447 | Protein of unknown function DUF1552 |
| 6773 | IPR000845 | Nucleoside phosphorylase domain |
| 6762 | IPR001272 | Phosphoenolpyruvate carboxykinase, ATP-utilising |
| 6733 | IPR006657 | Molybdopterin dinucleotide-binding domain |
| 6693 | IPR000092 | Polyprenyl synthetase |
| 6679 | IPR013767 | PAS fold |
| 6676 | IPR011429 | Cytochrome C, Planctomycete-type |
| 6672 | IPR019307 | RNA-binding protein AU-1/Ribonuclease E/G |
| 6666 | IPR025662 | Sigma-54 interaction domain, ATP-binding site 1 |
| 6662 | IPR002616 | tRNA-guanine(15) transglycosylase-like |
| 6661 | IPR001576 | Phosphoglycerate kinase |
| 6647 | IPR033248 | Transketolase, C-terminal domain |
| 6646 | IPR007698 | Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain |
| 6646 | IPR001412 | Aminoacyl-tRNA synthetase, class I, conserved site |
| 6620 | IPR007630 | RNA polymerase sigma-70 region 4 |
| 6612 | IPR020581 | Glycine cleavage system P protein |
| 6584 | IPR006096 | Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal |
| 6567 | IPR002125 | Cytidine and deoxycytidylate deaminase domain |
| 6560 | IPR006035 | Ureohydrolase |
| 6557 | IPR034300 | NADP transhydrogenase beta-like domain |
| 6533 | IPR006175 | YjgF/YER057c/UK114 family |
| 6523 | IPR044068 | Core-binding (CB) domain |
| 6517 | IPR001764 | Glycoside hydrolase, family 3, N-terminal |
| 6465 | IPR006158 | Cobalamin (vitamin B12)-binding domain |
| 6446 | IPR001712 | Type III secretion system FHIPEP |
| 6444 | IPR003346 | Transposase, IS116/IS110/IS902 |
| 6399 | IPR003869 | Polysaccharide biosynthesis protein, CapD-like domain |
| 6393 | IPR008258 | Transglycosylase SLT domain 1 |
| 6391 | IPR007863 | Peptidase M16, C-terminal |
| 6381 | IPR000905 | Gcp-like domain |
| 6347 | IPR010918 | PurM-like, C-terminal domain |
| 6347 | IPR002575 | Aminoglycoside phosphotransferase |
| 6343 | IPR029065 | Enolase C-terminal domain-like |
| 6310 | IPR024932 | Flavin transferase ApbE |
| 6300 | IPR032317 | RND efflux pump, membrane fusion protein, barrel-sandwich domain |
| 6297 | IPR000023 | Phosphofructokinase domain |
| 6293 | IPR006963 | Molybdopterin oxidoreductase, 4Fe-4S domain |
| 6284 | IPR011517 | RNA polymerase sigma-70 ECF-like |
| 6280 | IPR001537 | tRNA/rRNA methyltransferase, SpoU type |
| 6269 | IPR033764 | SD-repeat containing protein, B domain |
| 6262 | IPR020829 | Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain |
| 6258 | IPR000524 | Transcription regulator HTH, GntR |
| 6248 | IPR008207 | Signal transduction histidine kinase, phosphotransfer (Hpt) domain |
| 6241 | IPR006037 | Regulator of K+ conductance, C-terminal |
| 6221 | IPR005139 | Peptide chain release factor |
| 6214 | IPR000537 | UbiA prenyltransferase family |
| 6210 | IPR020810 | Enolase, C-terminal TIM barrel domain |
| 6209 | IPR012000 | Thiamine pyrophosphate enzyme, central domain |
| 6166 | IPR001242 | Condensation domain |
| 6154 | IPR012131 | Histidinol dehydrogenase |
| 6142 | IPR002376 | Formyl transferase, N-terminal |
| 6142 | IPR001264 | Glycosyl transferase, family 51 |
| 6124 | IPR018181 | Heat shock protein 70, conserved site |
| 6075 | IPR000551 | MerR-type HTH domain |
| 6074 | IPR001518 | Argininosuccinate synthase |
| 6070 | IPR000297 | Peptidyl-prolyl cis-trans isomerase, PpiC-type |
| 6061 | IPR025669 | AAA domain |
| 6046 | IPR005844 | Alpha-D-phosphohexomutase, alpha/beta/alpha domain I |
| 6038 | IPR013424 | PEP-CTERM protein-sorting domain |
| 6025 | IPR001123 | Amino acid exporter protein, LeuE-type |
| 6022 | IPR001597 | Aromatic amino acid beta-eliminating lyase/threonine aldolase |
| 6019 | IPR002052 | DNA methylase, N-6 adenine-specific, conserved site |
| 6005 | IPR004147 | ABC1 atypical kinase-like domain |
| 6001 | IPR023302 | Peptidase S9A, N-terminal domain |
| 6000 | IPR041492 | Haloacid dehalogenase-like hydrolase |
| 5997 | IPR002129 | Pyridoxal phosphate-dependent decarboxylase |
| 5991 | IPR002314 | Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) |
| 5990 | IPR010426 | Trimethylamine methyltransferase |
| 5964 | IPR000172 | Glucose-methanol-choline oxidoreductase, N-terminal |
| 5930 | IPR006691 | DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat |
| 5930 | IPR000453 | Chorismate synthase |
| 5927 | IPR013078 | Histidine phosphatase superfamily, clade-1 |
| 5887 | IPR001732 | UDP-glucose/GDP-mannose dehydrogenase, N-terminal |
| 5880 | IPR001179 | FKBP-type peptidyl-prolyl cis-trans isomerase domain |
| 5874 | IPR002645 | STAS domain |
| 5863 | IPR002830 | UbiD decarboxylyase family |
| 5859 | IPR022764 | Peptidase S54, rhomboid domain |
| 5848 | IPR002423 | Chaperonin Cpn60/GroEL/TCP-1 family |
| 5831 | IPR013765 | DNA recombination and repair protein RecA |
| 5829 | IPR001694 | NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H |
| 5819 | IPR008269 | Peptidase S16, Lon proteolytic domain |
| 5813 | IPR002695 | Bifunctional purine biosynthesis protein PurH-like |
| 5792 | IPR033756 | Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 |
| 5792 | IPR002208 | SecY/SEC61-alpha family |
| 5790 | IPR000257 | Uroporphyrinogen decarboxylase (URO-D) |
| 5746 | IPR016166 | FAD-binding domain, PCMH-type |
| 5732 | IPR006530 | YD repeat |
| 5730 | IPR031157 | Tr-type G domain, conserved site |
| 5713 | IPR040982 | DNA polymerase III alpha subunit finger domain |
| 5688 | IPR004697 | p-Aminobenzoyl-glutamate transport protein AbgT |
| 5678 | IPR006132 | Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding |
| 5645 | IPR022813 | Protein-export membrane protein SecD/SecF, archaeal and bacterial |
| 5644 | IPR030395 | Glycerophosphodiester phosphodiesterase domain |
| 5641 | IPR006194 | Glycine-tRNA synthetase, heterodimeric |
| 5638 | IPR002880 | Pyruvate flavodoxin/ferredoxin oxidoreductase, pyrimidine binding domain |
| 5636 | IPR008257 | Peptidase M19 |
| 5592 | IPR032678 | tRNA synthetases class I, catalytic domain |
| 5592 | IPR004107 | Integrase, SAM-like, N-terminal |
| 5570 | IPR000825 | SUF system FeS cluster assembly, SufBD |
| 5554 | IPR001465 | Malate synthase |
| 5549 | IPR001440 | Tetratricopeptide repeat 1 |
| 5546 | IPR003699 | S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA |
| 5517 | IPR001544 | Aminotransferase class IV |
| 5463 | IPR005517 | Translation elongation factor EFG/EF2, domain IV |
| 5453 | IPR007694 | DNA helicase, DnaB-like, C-terminal |
| 5441 | IPR000175 | Sodium:neurotransmitter symporter |
| 5424 | IPR013655 | PAS fold-3 |
| 5418 | IPR039648 | Pyridine nucleotide-disulphide oxidoreductase, N-terminal |
| 5395 | IPR004143 | Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain |
| 5387 | IPR006108 | 3-hydroxyacyl-CoA dehydrogenase, C-terminal |
| 5379 | IPR013839 | NAD-dependent DNA ligase, adenylation |
| 5376 | IPR029510 | Aldehyde dehydrogenase, glutamic acid active site |
| 5374 | IPR000943 | RNA polymerase sigma-70 |
| 5353 | IPR013563 | Oligopeptide/dipeptide ABC transporter, C-terminal |
| 5342 | IPR029479 | Nitroreductase |
| 5338 | IPR013155 | Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding |
| 5332 | IPR006089 | Acyl-CoA dehydrogenase, conserved site |
| 5330 | IPR002142 | Peptidase S49 |
| 5328 | IPR001130 | 3'-5' ssDNA/RNA exonuclease TatD-like |
| 5311 | IPR002938 | FAD-binding domain |
| 5308 | IPR013976 | Metal-dependent hydrolase HDOD |
| 5299 | IPR013105 | Tetratricopeptide repeat 2 |
| 5299 | IPR000600 | ROK family |
| 5293 | IPR004184 | Pyruvate formate lyase domain |
| 5290 | IPR030802 | ABC transporter permease MalE |
| 5290 | IPR006683 | Thioesterase domain |
| 5264 | IPR016188 | PurM-like, N-terminal domain |
| 5255 | IPR005481 | Biotin carboxylase-like, N-terminal domain |
| 5253 | IPR005017 | Outer membrane protein transport protein (OMPP1/FadL/TodX) |
| 5251 | IPR004101 | Mur ligase, C-terminal |
| 5239 | IPR003331 | UDP-N-acetylglucosamine 2-epimerase domain |
| 5227 | IPR002569 | Peptide methionine sulphoxide reductase MsrA domain |
| 5227 | IPR000835 | MarR-type HTH domain |
| 5224 | IPR017456 | CTP synthase, N-terminal |
| 5215 | IPR019861 | Type IX secretion system membrane protein, PorP/SprF family |
| 5204 | IPR003400 | Biopolymer transport protein ExbD/TolR |
| 5203 | IPR001453 | MoaB/Mog domain |
| 5197 | IPR046335 | Transcriptional regulator LacI/GalR-like, sensor domain |
| 5197 | IPR004291 | Transposase IS66, central domain |
| 5177 | IPR003781 | CoA-binding |
| 5162 | IPR004670 | Na+/H+ antiporter NhaA |
| 5159 | IPR002641 | Patatin-like phospholipase domain |
| 5155 | IPR019489 | Clp ATPase, C-terminal |
GO-slim
GO slim is a cut-down version of the GO ontologies that contain only a subset of terms from the GO resource. metaGOflow provides both a full GO annotation which is not displayed here as it is rather long and a slim version like the one shown here for the sediment case. On the first column there is the GO id, on the second its description, on the third its the GO ontology it belogs to (biological process, cellular component, molecular function) and on the fourth one we have the number of hits of the annotation on the reads.
| GO:0008150 | biological process | biological_process | 36605 |
| GO:0071973 | bacterial-type flagellar cell motility | biological_process | 8297 |
| GO:0071840 | cellular component organization or biogenesis | biological_process | 51015 |
| GO:0071103 | DNA conformation change | biological_process | 36743 |
| GO:0045454 | cell redox homeostasis | biological_process | 7193 |
| GO:0065003 | macromolecular complex assembly | biological_process | 3520 |
| GO:0016226 | iron-sulfur cluster assembly | biological_process | 10827 |
| GO:0017004 | cytochrome complex assembly | biological_process | 9958 |
| GO:0008152 | metabolic process | biological_process | 102385 |
| GO:0008218 | bioluminescence | biological_process | 615 |
| GO:0009058 | biosynthetic process | biological_process | 552434 |
| GO:0017000 | antibiotic biosynthetic process | biological_process | 8063 |
| GO:0009403 | toxin biosynthetic process | biological_process | 1454 |
| GO:0006259 | DNA metabolic process | biological_process | 242519 |
| GO:0016070 | RNA metabolic process | biological_process | 193244 |
| GO:0009317 | acetyl-CoA carboxylase complex | cellular_component | 2171 |
| GO:0009349 | riboflavin synthase complex | cellular_component | 2373 |
| GO:0009346 | citrate lyase complex | cellular_component | 225 |
| GO:0043190 | ATP-binding cassette (ABC) transporter complex | cellular_component | 18517 |
| GO:0000015 | phosphopyruvate hydratase complex | cellular_component | 0 |
| GO:0009341 | beta-galactosidase complex | cellular_component | 1827 |
| GO:0019008 | molybdopterin synthase complex | cellular_component | 1363 |
| GO:1990204 | oxidoreductase complex | cellular_component | 2011 |
| GO:0033202 | DNA helicase complex | cellular_component | 739 |
| GO:0042575 | DNA polymerase complex | cellular_component | 6469 |
| GO:0098796 | membrane protein complex | cellular_component | 752 |
| GO:0016469 | proton-transporting two-sector ATPase complex | cellular_component | 10876 |
| GO:0005839 | proteasome core complex | cellular_component | 1802 |
| GO:0005874 | microtubule | cellular_component | 119 |
| GO:0048500 | signal recognition particle | cellular_component | 2055 |
| GO:0009288 | bacterial type flagellum | cellular_component | 11096 |
| GO:0005840 | ribosome | cellular_component | 84272 |
| GO:0005694 | chromosome | cellular_component | 2085 |
| GO:0005727 | extrachromosomal circular DNA | cellular_component | 0 |
| GO:0005634 | nucleus | cellular_component | 89 |
| GO:0009579 | thylakoid | cellular_component | 44 |
| GO:0019012 | virion | cellular_component | 5 |
| GO:0003674 | molecular function | molecular_function | 68079 |
| GO:0016209 | antioxidant activity | molecular_function | 18108 |
| GO:0004601 | peroxidase activity | molecular_function | 8306 |
| GO:0003824 | catalytic activity | molecular_function | 227423 |
| GO:0016787 | hydrolase activity | molecular_function | 393109 |
| GO:0008233 | peptidase activity | molecular_function | 175119 |
| GO:0016791 | phosphatase activity | molecular_function | 11856 |
| GO:0017111 | nucleoside-triphosphatase activity | molecular_function | 143755 |
| GO:0009055 | electron carrier activity | molecular_function | 60810 |
| GO:0016853 | isomerase activity | molecular_function | 150834 |
| GO:0016874 | ligase activity | molecular_function | 249431 |
| GO:0016829 | lyase activity | molecular_function | 170518 |
| GO:0016491 | oxidoreductase activity | molecular_function | 658464 |
| GO:0000150 | recombinase activity | molecular_function | 6392 |
| GO:0004803 | transposase activiy | molecular_function | 29571 |
KEGG terms (KOs)
Similar to the IPS case, on the first column we get the number of hits an id had among the reads, on the second the KO and on the third its description.
| 13772 | K00626 | acetyl-CoA C-acetyltransferase [EC:2.3.1.9] |
| 13701 | K07497 | putative transposase |
| 10371 | K03310 | alanine or glycine:cation symporter, AGCS family |
| 9015 | K03406 | methyl-accepting chemotaxis protein |
| 8548 | K07486 | transposase |
| 8349 | K01915 | glutamine synthetase [EC:6.3.1.2] |
| 7961 | K00428 | cytochrome c peroxidase [EC:1.11.1.5] |
| 7596 | K00789 | S-adenosylmethionine synthetase [EC:2.5.1.6] |
| 7568 | K00134 | glyceraldehyde 3-phosphate dehydrogenase [EC:1.2.1.12] |
| 7544 | K00600 | glycine hydroxymethyltransferase [EC:2.1.2.1] |
| 7523 | K00873 | pyruvate kinase [EC:2.7.1.40] |
| 6706 | K03466 | DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family |
| 6606 | K01712 | urocanate hydratase [EC:4.2.1.49] |
| 6288 | K01689 | enolase [EC:4.2.1.11] |
| 6104 | K01937 | CTP synthase [EC:6.3.4.2] |
| 5999 | K03734 | FAD:protein FMN transferase [EC:2.7.1.180] |
| 5807 | K02600 | transcription termination/antitermination protein NusA |
| 5526 | K01251 | adenosylhomocysteinase [EC:3.3.1.1] |
| 5469 | K00602 | phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] |
| 5012 | K03559 | biopolymer transport protein ExbD |
| 4746 | K03092 | RNA polymerase sigma-54 factor |
| 4720 | K01610 | phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] |
| 4682 | K03313 | Na+:H+ antiporter, NhaA family |
| 4447 | K06888 | uncharacterized protein |
| 4373 | K08303 | putative protease [EC:3.4.-.-] |
| 4345 | K00948 | ribose-phosphate pyrophosphokinase [EC:2.7.6.1] |
| 4297 | K00688 | glycogen phosphorylase [EC:2.4.1.1] |
| 4285 | K15371 | glutamate dehydrogenase [EC:1.4.1.2] |
| 4282 | K07491 | putative transposase |
| 4178 | K01698 | porphobilinogen synthase [EC:4.2.1.24] |
| 4114 | K03701 | excinuclease ABC subunit A |
| 4109 | K03924 | MoxR-like ATPase [EC:3.6.3.-] |
| 4100 | K04077 | chaperonin GroEL |
| 4033 | K03118 | sec-independent protein translocase protein TatC |
| 4028 | K07304 | peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] |
| 4005 | K01595 | phosphoenolpyruvate carboxylase [EC:4.1.1.31] |
| 3983 | K02066 | phospholipid/cholesterol/gamma-HCH transport system permease protein |
| 3964 | K01939 | adenylosuccinate synthase [EC:6.3.4.4] |
| 3924 | K03040 | DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] |
| 3882 | K04079 | molecular chaperone HtpG |
| 3858 | K02338 | DNA polymerase III subunit beta [EC:2.7.7.7] |
| 3833 | K07462 | single-stranded-DNA-specific exonuclease [EC:3.1.-.-] |
| 3769 | K03553 | recombination protein RecA |
| 3732 | K01803 | triosephosphate isomerase (TIM) [EC:5.3.1.1] |
| 3693 | K03088 | RNA polymerase sigma-70 factor, ECF subfamily |
| 3648 | K04096 | DNA processing protein |
| 3633 | K03527 | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4] |
| 3625 | K03147 | phosphomethylpyrimidine synthase [EC:4.1.99.17] |
| 3576 | K01673 | carbonic anhydrase [EC:4.2.1.1] |
| 3544 | K01918 | pantoate--beta-alanine ligase [EC:6.3.2.1] |
| 3538 | K06941 | 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] |
| 3537 | K00297 | methylenetetrahydrofolate reductase (NADPH) [EC:1.5.1.20] |
| 3484 | K01358 | ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] |
| 3482 | K03111 | single-strand DNA-binding protein |
| 3452 | K03561 | biopolymer transport protein ExbB |
| 3392 | K01448 | N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] |
| 3388 | K02015 | iron complex transport system permease protein |
| 3332 | K02838 | ribosome recycling factor |
| 3272 | K01887 | arginyl-tRNA synthetase [EC:6.1.1.19] |
| 3228 | K01246 | DNA-3-methyladenine glycosylase I [EC:3.2.2.20] |
| 3224 | K06153 | undecaprenyl-diphosphatase [EC:3.6.1.27] |
| 3205 | K06076 | long-chain fatty acid transport protein |
| 3179 | K00606 | 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11] |
| 3135 | K03601 | exodeoxyribonuclease VII large subunit [EC:3.1.11.6] |
| 3062 | K01462 | peptide deformylase [EC:3.5.1.88] |
| 3054 | K04078 | chaperonin GroES |
| 3025 | K01626 | 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] |
| 2988 | K06911 | uncharacterized protein |
| 2982 | K22468 | polyphosphate kinase [EC:2.7.4.1] |
| 2945 | K04564 | superoxide dismutase, Fe-Mn family [EC:1.15.1.1] |
| 2935 | K01875 | seryl-tRNA synthetase [EC:6.1.1.11] |
| 2919 | K03497 | ParB family transcriptional regulator, chromosome partitioning protein |
| 2889 | K03664 | SsrA-binding protein |
| 2884 | K00793 | riboflavin synthase [EC:2.5.1.9] |
| 2883 | K03101 | signal peptidase II [EC:3.4.23.36] |
| 2880 | K07052 | uncharacterized protein |
| 2828 | K03687 | molecular chaperone GrpE |
| 2820 | K03744 | LemA protein |
| 2774 | K03522 | electron transfer flavoprotein alpha subunit |
| 2736 | K03630 | DNA repair protein RadC |
| 2726 | K00507 | stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1] |
| 2717 | K03521 | electron transfer flavoprotein beta subunit |
| 2701 | K02437 | glycine cleavage system H protein |
| 2656 | K03312 | glutamate:Na+ symporter, ESS family |
| 2647 | K06958 | RNase adapter protein RapZ |
| 2642 | K01619 | deoxyribose-phosphate aldolase [EC:4.1.2.4] |
| 2635 | K00275 | pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5] |
| 2627 | K00858 | NAD+ kinase [EC:2.7.1.23] |
| 2562 | K00573 | protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77] |
| 2556 | K01940 | argininosuccinate synthase [EC:6.3.4.5] |
| 2539 | K00765 | ATP phosphoribosyltransferase [EC:2.4.2.17] |
| 2535 | K01159 | crossover junction endodeoxyribonuclease RuvC [EC:3.1.22.4] |
| 2533 | K09930 | uncharacterized protein |
| 2481 | K03551 | holliday junction DNA helicase RuvB [EC:3.6.4.12] |
| 2466 | K00163 | pyruvate dehydrogenase E1 component [EC:1.2.4.1] |
| 2459 | K02078 | acyl carrier protein |
| 2398 | K07493 | putative transposase |
| 2386 | K00937 | polyphosphate kinase [EC:2.7.4.1] |
| 2377 | K07082 | UPF0755 protein |
| 2370 | K01790 | dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] |
| 2364 | K02520 | translation initiation factor IF-3 |
| 2310 | K01409 | N6-L-threonylcarbamoyladenine synthase [EC:2.3.1.234] |
| 2308 | K02897 | large subunit ribosomal protein L25 |
| 2306 | K02935 | large subunit ribosomal protein L7/L12 |
| 2292 | K02879 | large subunit ribosomal protein L17 |
| 2283 | K00228 | coproporphyrinogen III oxidase [EC:1.3.3.3] |
| 2234 | K07058 | membrane protein |
| 2233 | K06204 | DnaK suppressor protein |
| 2204 | K03782 | catalase-peroxidase [EC:1.11.1.21] |
| 2198 | K01972 | DNA ligase (NAD+) [EC:6.5.1.2] |
| 2191 | K00798 | cob(I)alamin adenosyltransferase [EC:2.5.1.17] |
| 2181 | K07568 | S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17] |
| 2168 | K00981 | phosphatidate cytidylyltransferase [EC:2.7.7.41] |
| 2156 | K01056 | peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] |
| 2135 | K07560 | D-aminoacyl-tRNA deacylase [EC:3.1.1.96] |
| 2134 | K00865 | glycerate 2-kinase [EC:2.7.1.165] |
| 2120 | K03808 | paraquat-inducible protein A |
| 2101 | K00286 | pyrroline-5-carboxylate reductase [EC:1.5.1.2] |
| 2092 | K00794 | 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] |
| 2079 | K04066 | primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:3.6.4.-] |
| 2075 | K07068 | uncharacterized protein |
| 2074 | K12942 | aminobenzoyl-glutamate transport protein |
| 2070 | K18979 | epoxyqueuosine reductase [EC:1.17.99.6] |
| 2054 | K03702 | excinuclease ABC subunit B |
| 2044 | K02888 | large subunit ribosomal protein L21 |
| 2008 | K07089 | uncharacterized protein |
| 2007 | K07738 | transcriptional repressor NrdR |
| 2000 | K01495 | GTP cyclohydrolase IA [EC:3.5.4.16] |
| 1996 | K03070 | preprotein translocase subunit SecA [EC:7.4.2.8] |
| 1992 | K06187 | recombination protein RecR |
| 1982 | K06997 | PLP dependent protein |
| 1975 | K01695 | tryptophan synthase alpha chain [EC:4.2.1.20] |
| 1972 | K01613 | phosphatidylserine decarboxylase [EC:4.1.1.65] |
| 1966 | K09710 | ribosome-associated protein |
| 1942 | K01809 | mannose-6-phosphate isomerase [EC:5.3.1.8] |
| 1941 | K00426 | cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] |
| 1931 | K03781 | catalase [EC:1.11.1.6] |
| 1928 | K09747 | uncharacterized protein |
| 1924 | K02410 | flagellar motor switch protein FliG |
| 1921 | K02884 | large subunit ribosomal protein L19 |
| 1919 | K07402 | xanthine dehydrogenase accessory factor |
| 1919 | K03621 | phosphate acyltransferase [EC:2.3.1.274] |
| 1897 | K03526 | (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3] |
| 1891 | K03635 | molybdopterin synthase catalytic subunit [EC:2.8.1.12] |
| 1890 | K00859 | dephospho-CoA kinase [EC:2.7.1.24] |
| 1864 | K01737 | 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] |
| 1862 | K03569 | rod shape-determining protein MreB and related proteins |
| 1853 | K03801 | lipoyl(octanoyl) transferase [EC:2.3.1.181] |
| 1846 | K03584 | DNA repair protein RecO (recombination protein O) |
| 1843 | K05896 | segregation and condensation protein A |
| 1835 | K03563 | carbon storage regulator |
| 1823 | K09861 | uncharacterized protein |
| 1822 | K07735 | putative transcriptional regulator |
| 1822 | K06024 | segregation and condensation protein B |
| 1819 | K09748 | ribosome maturation factor RimP |
| 1817 | K21929 | uracil-DNA glycosylase [EC:3.2.2.27] |
| 1810 | K01724 | 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96] |
| 1809 | K09903 | uridylate kinase [EC:2.7.4.22] |
| 1806 | K01273 | membrane dipeptidase [EC:3.4.13.19] |
| 1800 | K01778 | diaminopimelate epimerase [EC:5.1.1.7] |
| 1795 | K02492 | glutamyl-tRNA reductase [EC:1.2.1.70] |
| 1794 | K07126 | uncharacterized protein |
| 1769 | K21470 | L,D-transpeptidase YcbB |
| 1767 | K00549 | 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] |
| 1746 | K11749 | regulator of sigma E protease [EC:3.4.24.-] |
| 1745 | K01077 | alkaline phosphatase [EC:3.1.3.1] |
| 1733 | K02834 | ribosome-binding factor A |
| 1721 | K03832 | periplasmic protein TonB |
| 1718 | K02887 | large subunit ribosomal protein L20 |
| 1709 | K07393 | glutathionyl-hydroquinone reductase [EC:1.8.5.7] |
| 1690 | K02871 | large subunit ribosomal protein L13 |
| 1687 | K06199 | fluoride exporter |
| 1687 | K01951 | GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] |
| 1672 | K02878 | large subunit ribosomal protein L16 |
| 1668 | K07240 | chromate transporter |
| 1658 | K03282 | large conductance mechanosensitive channel |
| 1655 | K03545 | trigger factor |
| 1655 | K02876 | large subunit ribosomal protein L15 |
| 1648 | K00635 | diacylglycerol O-acyltransferase / wax synthase [EC:2.3.1.20 2.3.1.75] |
| 1643 | K02909 | large subunit ribosomal protein L31 |
| 1637 | K07447 | putative holliday junction resolvase [EC:3.1.-.-] |
| 1632 | K00099 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] |
| 1624 | K01752 | L-serine dehydratase [EC:4.3.1.17] |
| 1621 | K06415 | stage V sporulation protein R |
| 1602 | K02990 | small subunit ribosomal protein S6 |
| 1597 | K02959 | small subunit ribosomal protein S16 |
| 1597 | K01653 | acetolactate synthase I/III small subunit [EC:2.2.1.6] |
| 1594 | K09125 | uncharacterized protein |
| 1588 | K00951 | GTP pyrophosphokinase [EC:2.7.6.5] |
| 1566 | K02867 | large subunit ribosomal protein L11 |
| 1560 | K09919 | uncharacterized protein |
| 1554 | K01638 | malate synthase [EC:2.3.3.9] |
| 1543 | K00954 | pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] |
| 1526 | K01095 | phosphatidylglycerophosphatase A [EC:3.1.3.27] |
| 1521 | K02004 | putative ABC transport system permease protein |
| 1518 | K06925 | tRNA threonylcarbamoyladenosine biosynthesis protein TsaE |
| 1516 | K03570 | rod shape-determining protein MreC |
| 1515 | K04754 | phospholipid-binding lipoprotein MlaA |
| 1512 | K00432 | glutathione peroxidase [EC:1.11.1.9] |
| 1505 | K07112 | uncharacterized protein |
| 1505 | K07054 | uncharacterized protein |
| 1500 | K07093 | uncharacterized protein |
| 1490 | K07090 | uncharacterized protein |
| 1476 | K00560 | thymidylate synthase [EC:2.1.1.45] |
| 1466 | K03210 | preprotein translocase subunit YajC |
| 1449 | K14266 | tryptophan 7-halogenase [EC:1.14.19.9] |
| 1444 | K02860 | 16S rRNA processing protein RimM |
| 1442 | K03558 | membrane protein required for colicin V production |
| 1442 | K01507 | inorganic pyrophosphatase [EC:3.6.1.1] |
| 1431 | K03325 | arsenite transporter |
| 1428 | K07484 | transposase |
| 1424 | K01607 | 4-carboxymuconolactone decarboxylase [EC:4.1.1.44] |
| 1418 | K02899 | large subunit ribosomal protein L27 |
| 1413 | K02197 | cytochrome c-type biogenesis protein CcmE |
| 1409 | K07152 | protein SCO1/2 |
| 1407 | K06949 | ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] |
| 1404 | K09767 | cyclic-di-GMP-binding protein |
| 1403 | K07460 | putative endonuclease |
| 1399 | K07234 | uncharacterized protein involved in response to NO |
| 1399 | K02238 | competence protein ComEC |
| 1387 | K02954 | small subunit ribosomal protein S14 |
| 1386 | K02950 | small subunit ribosomal protein S12 |
| 1382 | K03186 | flavin prenyltransferase [EC:2.5.1.129] |
| 1374 | K03637 | cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] |
| 1371 | K02968 | small subunit ribosomal protein S20 |
| 1371 | K00945 | CMP/dCMP kinase [EC:2.7.4.25] |
| 1370 | K00287 | dihydrofolate reductase [EC:1.5.1.3] |
| 1369 | K09927 | uncharacterized protein |
| 1350 | K00540 | F420H(2)-dependent quinone reductase [EC:1.1.98.-] |
Pfam
Like in the IPS and the KEGG cases.
| 115018 | PF00005 | ABC transporter |
| 73852 | PF00884 | Sulfatase |
| 71296 | PF00873 | AcrB/AcrD/AcrF family |
| 61482 | PF00072 | Response regulator receiver domain |
| 59116 | PF00171 | Aldehyde dehydrogenase family |
| 54482 | PF00106 | short chain dehydrogenase |
| 53966 | PF00501 | AMP-binding enzyme |
| 43792 | PF02518 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase |
| 40905 | PF00990 | Diguanylate cyclase, GGDEF domain |
| 39522 | PF07394 | Protein of unknown function (DUF1501) |
| 37109 | PF00069 | Protein kinase domain |
| 34621 | PF00158 | Sigma-54 interaction domain |
| 31267 | PF00155 | Aminotransferase class I and II |
| 28968 | PF13561 | Enoyl-(Acyl carrier protein) reductase |
| 27324 | PF00563 | EAL domain |
| 26516 | PF13517 | FG-GAP-like repeat |
| 26207 | PF00202 | Aminotransferase class-III |
| 25877 | PF00528 | Binding-protein-dependent transport system inner membrane component |
| 25372 | PF00437 | Type II/IV secretion system protein |
| 24069 | PF00378 | Enoyl-CoA hydratase/isomerase |
| 24012 | PF00512 | His Kinase A (phospho-acceptor) domain |
| 23974 | PF00009 | Elongation factor Tu GTP binding domain |
| 23935 | PF00535 | Glycosyl transferase family 2 |
| 23324 | PF00133 | tRNA synthetases class I (I, L, M and V) |
| 22485 | PF00266 | Aminotransferase class-V |
| 22307 | PF01370 | NAD dependent epimerase/dehydratase family |
| 21698 | PF04542 | Sigma-70 region 2 |
| 21628 | PF00441 | Acyl-CoA dehydrogenase, C-terminal domain |
| 21452 | PF00012 | Hsp70 protein |
| 21018 | PF03466 | LysR substrate binding domain |
| 20979 | PF01053 | Cys/Met metabolism PLP-dependent enzyme |
| 20576 | PF00571 | CBS domain |
| 20441 | PF00126 | Bacterial regulatory helix-turn-helix protein, lysR family |
| 20188 | PF07676 | WD40-like Beta Propeller Repeat |
| 19818 | PF06808 | Tripartite ATP-independent periplasmic transporter, DctM component |
| 19175 | PF02515 | CoA-transferase family III |
| 18783 | PF00361 | Proton-conducting membrane transporter |
| 18745 | PF07583 | Protein of unknown function (DUF1549) |
| 18661 | PF07992 | Pyridine nucleotide-disulphide oxidoreductase |
| 18266 | PF07587 | Protein of unknown function (DUF1553) |
| 18130 | PF17803 | Bacterial cadherin-like domain |
| 18027 | PF00271 | Helicase conserved C-terminal domain |
| 18015 | PF12228 | Protein of unknown function (DUF3604) |
| 18007 | PF00270 | DEAD/DEAH box helicase |
| 17618 | PF00384 | Molybdopterin oxidoreductase |
| 17375 | PF00890 | FAD binding domain |
| 17161 | PF00296 | Luciferase-like monooxygenase |
| 16908 | PF01041 | DegT/DnrJ/EryC1/StrS aminotransferase family |
| 16388 | PF00534 | Glycosyl transferases group 1 |
| 16353 | PF00291 | Pyridoxal-phosphate dependent enzyme |
| 16226 | PF00115 | Cytochrome C and Quinol oxidase polypeptide I |
| 16009 | PF02786 | Carbamoyl-phosphate synthase L chain, ATP binding domain |
| 15833 | PF17963 | Bacterial Ig domain |
| 15708 | PF00330 | Aconitase family (aconitate hydratase) |
| 15665 | PF02771 | Acyl-CoA dehydrogenase, N-terminal domain |
| 15551 | PF00108 | Thiolase, N-terminal domain |
| 15375 | PF00144 | Beta-lactamase |
| 15270 | PF01039 | Carboxyl transferase domain |
| 15259 | PF17892 | Cadherin-like domain |
| 15074 | PF00326 | Prolyl oligopeptidase family |
| 15062 | PF00117 | Glutamine amidotransferase class-I |
| 14668 | PF00486 | Transcriptional regulatory protein, C terminal |
| 14577 | PF01019 | Gamma-glutamyltranspeptidase |
| 14563 | PF00353 | RTX calcium-binding nonapeptide repeat (4 copies) |
| 14403 | PF00109 | Beta-ketoacyl synthase, N-terminal domain |
| 14266 | PF16363 | GDP-mannose 4,6 dehydratase |
| 14190 | PF00474 | Sodium:solute symporter family |
| 14121 | PF13424 | Tetratricopeptide repeat |
| 14106 | PF01266 | FAD dependent oxidoreductase |
| 13834 | PF00589 | Phage integrase family |
| 13797 | PF02321 | Outer membrane efflux protein |
| 13646 | PF00004 | ATPase family associated with various cellular activities (AAA) |
| 13597 | PF00152 | tRNA synthetases class II (D, K and N) |
| 13559 | PF00483 | Nucleotidyl transferase |
| 13399 | PF01345 | Domain of unknown function DUF11 |
| 13394 | PF08241 | Methyltransferase domain |
| 13325 | PF07715 | TonB-dependent Receptor Plug Domain |
| 13324 | PF00440 | Bacterial regulatory proteins, tetR family |
| 13263 | PF07963 | Prokaryotic N-terminal methylation motif |
| 13238 | PF05088 | Bacterial NAD-glutamate dehydrogenase |
| 13156 | PF00753 | Metallo-beta-lactamase superfamily |
| 13132 | PF01926 | 50S ribosome-binding GTPase |
| 13063 | PF01642 | Methylmalonyl-CoA mutase |
| 13043 | PF02826 | D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain |
| 13018 | PF01979 | Amidohydrolase family |
| 12954 | PF00248 | Aldo/keto reductase family |
| 12951 | PF00924 | Mechanosensitive ion channel |
| 12873 | PF08281 | Sigma-70, region 4 |
| 12863 | PF00082 | Subtilase family |
| 12783 | PF03781 | Sulfatase-modifying factor enzyme 1 |
| 12764 | PF00496 | Bacterial extracellular solute-binding proteins, family 5 Middle |
| 12624 | PF00006 | ATP synthase alpha/beta family, nucleotide-binding domain |
| 12572 | PF02779 | Transketolase, pyrimidine binding domain |
| 12571 | PF00561 | alpha/beta hydrolase fold |
| 12517 | PF01645 | Conserved region in glutamate synthase |
| 12498 | PF00593 | TonB dependent receptor |
| 12495 | PF13193 | AMP-binding enzyme C-terminal domain |
| 12491 | PF02687 | FtsX-like permease family |
| 12476 | PF00905 | Penicillin binding protein transpeptidase domain |
| 12404 | PF01571 | Aminomethyltransferase folate-binding domain |
| 12225 | PF00375 | Sodium:dicarboxylate symporter family |
| 12215 | PF01408 | Oxidoreductase family, NAD-binding Rossmann fold |
| 12165 | PF01235 | Sodium:alanine symporter family |
| 12037 | PF00575 | S1 RNA binding domain |
| 12036 | PF00583 | Acetyltransferase (GNAT) family |
| 11936 | PF00206 | Lyase |
| 11846 | PF01425 | Amidase |
| 11778 | PF01554 | MatE |
| 11764 | PF02775 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain |
| 11746 | PF00400 | WD domain, G-beta repeat |
| 11689 | PF00749 | tRNA synthetases class I (E and Q), catalytic domain |
| 11630 | PF00275 | EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) |
| 11568 | PF00580 | UvrD/REP helicase N-terminal domain |
| 11548 | PF07690 | Major Facilitator Superfamily |
| 11524 | PF00015 | Methyl-accepting chemotaxis protein (MCP) signalling domain |
| 11519 | PF00198 | 2-oxoacid dehydrogenases acyltransferase (catalytic domain) |
| 11212 | PF00733 | Asparagine synthase |
| 11210 | PF00672 | HAMP domain |
| 11168 | PF02867 | Ribonucleotide reductase, barrel domain |
| 11164 | PF00180 | Isocitrate/isopropylmalate dehydrogenase |
| 11145 | PF02028 | BCCT, betaine/carnitine/choline family transporter |
| 11139 | PF00920 | Dehydratase family |
| 10977 | PF00582 | Universal stress protein family |
| 10924 | PF00557 | Metallopeptidase family M24 |
| 10702 | PF00285 | Citrate synthase, C-terminal domain |
| 10675 | PF07724 | AAA domain (Cdc48 subfamily) |
| 10662 | PF14559 | Tetratricopeptide repeat |
| 10554 | PF00696 | Amino acid kinase family |
| 10506 | PF00521 | DNA gyrase/topoisomerase IV, subunit A |
| 10412 | PF02896 | PEP-utilising enzyme, PEP-binding domain |
| 10400 | PF08240 | Alcohol dehydrogenase GroES-like domain |
| 10395 | PF07726 | ATPase family associated with various cellular activities (AAA) |
| 10340 | PF00120 | Glutamine synthetase, catalytic domain |
| 10330 | PF00676 | Dehydrogenase E1 component |
| 10313 | PF02738 | Molybdopterin cofactor-binding domain |
| 10295 | PF00999 | Sodium/hydrogen exchanger family |
| 10293 | PF00482 | Type II secretion system (T2SS), protein F |
| 10281 | PF03480 | Bacterial extracellular solute-binding protein, family 7 |
| 10194 | PF00795 | Carbon-nitrogen hydrolase |
| 10150 | PF00578 | AhpC/TSA family |
| 10142 | PF00892 | EamA-like transporter family |
| 10111 | PF00916 | Sulfate permease family |
| 10103 | PF02653 | Branched-chain amino acid transport system / permease component |
| 10022 | PF00196 | Bacterial regulatory proteins, luxR family |
| 10012 | PF00293 | NUDIX domain |
| 9915 | PF13533 | Biotin-lipoyl like |
| 9907 | PF20256 | Molybdopterin cofactor-binding domain |
| 9888 | PF02770 | Acyl-CoA dehydrogenase, middle domain |
| 9877 | PF00793 | DAHP synthetase I family |
| 9871 | PF00497 | Bacterial extracellular solute-binding proteins, family 3 |
| 9834 | PF00691 | OmpA family |
| 9824 | PF00909 | Ammonium Transporter Family |
| 9703 | PF02776 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain |
| 9587 | PF07969 | Amidohydrolase family |
| 9547 | PF01098 | Cell cycle protein |
| 9464 | PF00211 | Adenylate and Guanylate cyclase catalytic domain |
| 9315 | PF12833 | Helix-turn-helix domain |
| 9310 | PF03976 | Polyphosphate kinase 2 (PPK2) |
| 9299 | PF00579 | tRNA synthetases class I (W and Y) |
| 9292 | PF02737 | 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain |
| 9278 | PF00464 | Serine hydroxymethyltransferase |
| 9203 | PF01411 | tRNA synthetases class II (A) |
| 9200 | PF00664 | ABC transporter transmembrane region |
| 9118 | PF00037 | 4Fe-4S binding domain |
| 9067 | PF02954 | Bacterial regulatory protein, Fis family |
| 8955 | PF00448 | SRP54-type protein, GTPase domain |
| 8941 | PF07596 | Protein of unknown function (DUF1559) |
| 8932 | PF00425 | chorismate binding enzyme |
| 8928 | PF01839 | FG-GAP repeat |
| 8884 | PF08245 | Mur ligase middle domain |
| 8859 | PF00364 | Biotin-requiring enzyme |
| 8839 | PF00107 | Zinc-binding dehydrogenase |
| 8685 | PF02538 | Hydantoinase B/oxoprolinase |
| 8654 | PF00465 | Iron-containing alcohol dehydrogenase |
| 8634 | PF00849 | RNA pseudouridylate synthase |
| 8627 | PF18911 | PKD domain |
| 8508 | PF14312 | FG-GAP repeat |
| 8490 | PF02508 | Rnf-Nqr subunit, membrane protein |
| 8486 | PF00294 | pfkB family carbohydrate kinase |
| 8461 | PF02801 | Beta-ketoacyl synthase, C-terminal domain |
| 8452 | PF02163 | Peptidase family M50 |
| 8444 | PF00311 | Phosphoenolpyruvate carboxylase |
| 8422 | PF09334 | tRNA synthetases class I (M) |
| 8356 | PF03971 | Monomeric isocitrate dehydrogenase |
| 8330 | PF13450 | NAD(P)-binding Rossmann-like domain |
| 8268 | PF00550 | Phosphopantetheine attachment site |
| 8267 | PF07733 | Bacterial DNA polymerase III alpha NTPase domain |
| 8265 | PF03030 | Inorganic H+ pyrophosphatase |
| 8194 | PF00562 | RNA polymerase Rpb2, domain 6 |
| 8180 | PF01546 | Peptidase family M20/M25/M40 |
| 8164 | PF00682 | HMGL-like |
| 8161 | PF00160 | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD |
| 8131 | PF01618 | MotA/TolQ/ExbB proton channel family |
| 8083 | PF02803 | Thiolase, C-terminal domain |
| 8067 | PF00709 | Adenylosuccinate synthetase |
| 8063 | PF01804 | Penicillin amidase |
| 8025 | PF01207 | Dihydrouridine synthase (Dus) |
| 7974 | PF13361 | UvrD-like helicase C-terminal domain |
| 7961 | PF00128 | Alpha amylase, catalytic domain |
| 7940 | PF05960 | Bacterial protein of unknown function (DUF885) |
| 7929 | PF00903 | Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily |
| 7913 | PF00224 | Pyruvate kinase, barrel domain |
| 7905 | PF00221 | Aromatic amino acid lyase |
| 7842 | PF01145 | SPFH domain / Band 7 family |
| 7828 | PF02397 | Bacterial sugar transferase |
| 7809 | PF07494 | Two component regulator propeller |
| 7769 | PF04389 | Peptidase family M28 |
| 7759 | PF00122 | E1-E2 ATPase |
| 7758 | PF00809 | Pterin binding enzyme |
| 7751 | PF13649 | Methyltransferase domain |
| 7731 | PF01435 | Peptidase family M48 |
| 7725 | PF07517 | SecA DEAD-like domain |
| 7725 | PF01551 | Peptidase family M23 |
| 7723 | PF00581 | Rhodanese-like domain |
| 7713 | PF00456 | Transketolase, thiamine diphosphate binding domain |
| 7699 | PF07687 | Peptidase dimerisation domain |
| 7695 | PF03116 | NQR2, RnfD, RnfE family |
| 7689 | PF00724 | NADH:flavin oxidoreductase / NADH oxidase family |
| 7636 | PF00263 | Bacterial type II and III secretion system protein |
| 7624 | PF07995 | Glucose / Sorbosone dehydrogenase |
| 7599 | PF00478 | IMP dehydrogenase / GMP reductase domain |
| 7569 | PF13573 | SprB repeat |
| 7559 | PF00355 | Rieske [2Fe-2S] domain |
| 7465 | PF06439 | 3-keto-disaccharide hydrolase |
| 7456 | PF00132 | Bacterial transferase hexapeptide (six repeats) |
| 7444 | PF03446 | NAD binding domain of 6-phosphogluconate dehydrogenase |
| 7424 | PF01565 | FAD binding domain |
| 7412 | PF01432 | Peptidase family M3 |
| 7380 | PF04055 | Radical SAM superfamily |
| 7366 | PF01032 | FecCD transport family |
| 7352 | PF13432 | Tetratricopeptide repeat |
| 7341 | PF01134 | Glucose inhibited division protein A |
| 7321 | PF02412 | Thrombospondin type 3 repeat |
| 7320 | PF00701 | Dihydrodipicolinate synthetase family |
| 7315 | PF01966 | HD domain |
| 7290 | PF01553 | Acyltransferase |
| 7283 | PF00310 | Glutamine amidotransferases class-II |
| 7274 | PF01268 | Formate--tetrahydrofolate ligase |
| 7243 | PF02254 | TrkA-N domain |
| 7236 | PF13437 | HlyD family secretion protein |
| 7233 | PF02574 | Homocysteine S-methyltransferase |
| 7229 | PF01131 | DNA topoisomerase |
| 7229 | PF00067 | Cytochrome P450 |
| 7190 | PF13469 | Sulfotransferase family |
| 7172 | PF00027 | Cyclic nucleotide-binding domain |
| 7140 | PF01326 | Pyruvate phosphate dikinase, AMP/ATP-binding domain |
| 7091 | PF03572 | Peptidase family S41 |
| 7075 | PF02852 | Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain |
| 7060 | PF00679 | Elongation factor G C-terminus |
| 7015 | PF00977 | Histidine biosynthesis protein |
| 6981 | PF00498 | FHA domain |
| 6927 | PF00883 | Cytosol aminopeptidase family, catalytic domain |
| 6916 | PF00476 | DNA polymerase family A |
| 6912 | PF03553 | Na+/H+ antiporter family |
| 6864 | PF00459 | Inositol monophosphatase family |
| 6842 | PF02913 | FAD linked oxidases, C-terminal domain |
| 6803 | PF01557 | Fumarylacetoacetate (FAA) hydrolase family |
| 6802 | PF07586 | Protein of unknown function (DUF1552) |
| 6773 | PF01048 | Phosphorylase superfamily |
| 6762 | PF01293 | Phosphoenolpyruvate carboxykinase |
| 6733 | PF01568 | Molydopterin dinucleotide binding domain |
| 6693 | PF00348 | Polyprenyl synthetase |
| 6691 | PF13365 | Trypsin-like peptidase domain |
| 6679 | PF00989 | PAS fold |
| 6676 | PF07635 | Planctomycete cytochrome C |
| 6672 | PF10150 | Ribonuclease E/G family |
| 6662 | PF01702 | Queuine tRNA-ribosyltransferase |
| 6661 | PF00162 | Phosphoglycerate kinase |
| 6647 | PF02780 | Transketolase, C-terminal domain |
| 6646 | PF01262 | Alanine dehydrogenase/PNT, C-terminal domain |
| 6620 | PF04545 | Sigma-70, region 4 |
| 6613 | PF01476 | LysM domain |
| 6612 | PF13414 | TPR repeat |
| 6612 | PF02347 | Glycine cleavage system P-protein |
| 6588 | PF01380 | SIS domain |
| 6584 | PF00208 | Glutamate/Leucine/Phenylalanine/Valine dehydrogenase |
| 6557 | PF02233 | NAD(P) transhydrogenase beta subunit |
| 6533 | PF01042 | Endoribonuclease L-PSP |
| 6517 | PF00933 | Glycosyl hydrolase family 3 N terminal domain |
| 6499 | PF06723 | MreB/Mbl protein |
| 6458 | PF01011 | PQQ enzyme repeat |
| 6446 | PF00771 | FHIPEP family |
| 6444 | PF02371 | Transposase IS116/IS110/IS902 family |
| 6428 | PF18962 | Secretion system C-terminal sorting domain |
| 6416 | PF00491 | Arginase family |
| 6399 | PF02719 | Polysaccharide biosynthesis protein |
| 6393 | PF01464 | Transglycosylase SLT domain |
| 6391 | PF05193 | Peptidase M16 inactive domain |
| 6381 | PF00814 | tRNA N6-adenosine threonylcarbamoyltransferase |
| 6347 | PF02769 | AIR synthase related protein, C-terminal domain |
| 6347 | PF01636 | Phosphotransferase enzyme family |
| 6343 | PF13378 | Enolase C-terminal domain-like |
| 6310 | PF02424 | ApbE family |
| 6300 | PF16576 | Barrel-sandwich domain of CusB or HlyD membrane-fusion |
| 6297 | PF00365 | Phosphofructokinase |
| 6293 | PF13646 | HEAT repeats |
| 6284 | PF07638 | ECF sigma factor |
| 6281 | PF13692 | Glycosyl transferases group 1 |
| 6280 | PF00588 | SpoU rRNA Methylase family |
| 6269 | PF17210 | SdrD B-like domain |
| 6262 | PF02800 | Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain |
| 6230 | PF01135 | Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) |
| 6229 | PF00034 | Cytochrome c |
| 6221 | PF03462 | PCRF domain |
| 6214 | PF01040 | UbiA prenyltransferase family |
| 6210 | PF00113 | Enolase, C-terminal TIM barrel domain |
| 6209 | PF00205 | Thiamine pyrophosphate enzyme, central domain |
| 6206 | PF00392 | Bacterial regulatory proteins, gntR family |
| 6200 | PF00342 | Phosphoglucose isomerase |
| 6166 | PF00668 | Condensation domain |
| 6154 | PF00815 | Histidinol dehydrogenase |
| 6150 | PF07228 | Stage II sporulation protein E (SpoIIE) |
| 6142 | PF00912 | Transglycosylase |
| 6142 | PF00551 | Formyl transferase |
| 6130 | PF13181 | Tetratricopeptide repeat |
| 6091 | PF13360 | PQQ-like domain |
| 6085 | PF13385 | Concanavalin A-like lectin/glucanases superfamily |
| 6074 | PF00764 | Arginosuccinate synthase |
| 6061 | PF13614 | AAA domain |
| 6046 | PF02878 | Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I |
| 6025 | PF01810 | LysE type translocator |
| 6022 | PF01212 | Beta-eliminating lyase |
| 6005 | PF03109 | ABC1 atypical kinase-like domain |
| 6001 | PF02897 | Prolyl oligopeptidase, N-terminal beta-propeller domain |
| 6000 | PF13419 | Haloacid dehalogenase-like hydrolase |
| 5997 | PF00282 | Pyridoxal-dependent decarboxylase conserved domain |
| 5991 | PF00587 | tRNA synthetase class II core domain (G, H, P, S and T) |
| 5990 | PF06253 | Trimethylamine methyltransferase (MTTB) |
| 5960 | PF01381 | Helix-turn-helix |
| 5957 | PF00732 | GMC oxidoreductase |
| 5930 | PF03989 | DNA gyrase C-terminal domain, beta-propeller |
| 5930 | PF01264 | Chorismate synthase |
| 5927 | PF00300 | Histidine phosphatase superfamily (branch 1) |
| 5887 | PF03721 | UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain |
| 5863 | PF01977 | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase |
| 5859 | PF01694 | Rhomboid family |
| 5848 | PF00118 | TCP-1/cpn60 chaperonin family |
| 5831 | PF00154 | recA bacterial DNA recombination protein |
| 5829 | PF00146 | NADH dehydrogenase |
| 5813 | PF01808 | AICARFT/IMPCHase bienzyme |
| 5792 | PF10609 | NUBPL iron-transfer P-loop NTPase |
| 5792 | PF00344 | SecY |
| 5790 | PF01208 | Uroporphyrinogen decarboxylase (URO-D) |
| 5713 | PF17657 | Bacterial DNA polymerase III alpha subunit finger domain |
| 5695 | PF13683 | Integrase core domain |
| 5688 | PF03806 | AbgT putative transporter family |
| 5678 | PF02729 | Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain |
| 5645 | PF02355 | Protein export membrane protein |
| 5638 | PF01855 | Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg |
| 5613 | PF05362 | Lon protease (S16) C-terminal proteolytic domain |
| 5592 | PF01406 | tRNA synthetases class I (C) catalytic domain |
| 5570 | PF01458 | SUF system FeS cluster assembly, SufBD |
| 5554 | PF01274 | Malate synthase |
| 5549 | PF00515 | Tetratricopeptide repeat |
| 5546 | PF02547 | Queuosine biosynthesis protein |
| 5517 | PF01063 | Amino-transferase class IV |
| 5502 | PF00254 | FKBP-type peptidyl-prolyl cis-trans isomerase |
| 5463 | PF03764 | Elongation factor G, domain IV |
| 5455 | PF01244 | Membrane dipeptidase (Peptidase family M19) |
| 5444 | PF03796 | DnaB-like helicase C terminal domain |
| 5431 | PF04909 | Amidohydrolase |
| 5424 | PF08447 | PAS fold |
| 5418 | PF00070 | Pyridine nucleotide-disulphide oxidoreductase |
| 5398 | PF13347 | MFS/sugar transport protein |
| 5387 | PF00725 | 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain |
| 5379 | PF01653 | NAD-dependent DNA ligase adenylation domain |
| 5342 | PF00881 | Nitroreductase family |
| 5338 | PF08264 | Anticodon-binding domain of tRNA ligase |
| 5330 | PF01343 | Peptidase family S49 |
| 5328 | PF01026 | TatD related DNase |
| 5311 | PF01494 | FAD binding domain |
| 5311 | PF00085 | Thioredoxin |
| 5305 | PF00665 | Integrase core domain |
| 5299 | PF07719 | Tetratricopeptide repeat |
| 5293 | PF00111 | 2Fe-2S iron-sulfur cluster binding domain |
| 5291 | PF00480 | ROK family |
| 5290 | PF03061 | Thioesterase superfamily |
| 5290 | PF02405 | Permease MlaE |
| 5264 | PF00586 | AIR synthase related protein, N-terminal domain |
| 5255 | PF00289 | Biotin carboxylase, N-terminal domain |
| 5253 | PF03349 | Outer membrane protein transport protein (OMPP1/FadL/TodX) |
| 5251 | PF02875 | Mur ligase family, glutamate ligase domain |
| 5239 | PF02350 | UDP-N-acetylglucosamine 2-epimerase |
| 5227 | PF01625 | Peptide methionine sulfoxide reductase |
| 5224 | PF06418 | CTP synthase N-terminus |
| 5215 | PF11751 | Type IX secretion system membrane protein PorP/SprF |
| 5204 | PF02472 | Biopolymer transport protein ExbD/TolR |
| 5203 | PF00994 | Probable molybdopterin binding domain |
| 5197 | PF13377 | Periplasmic binding protein-like domain |
| 5197 | PF03050 | Transposase IS66 family |
| 5187 | PF02353 | Mycolic acid cyclopropane synthetase |
| 5162 | PF06965 | Na+/H+ antiporter 1 |
| 5155 | PF10431 | C-terminal, D2-small domain, of ClpB protein |
| 5155 | PF00950 | ABC 3 transport family |
| 5139 | PF01627 | Hpt domain |
| 5136 | PF01515 | Phosphate acetyl/butaryl transferase |
| 5114 | PF04898 | Glutamate synthase central domain |
| 5111 | PF03176 | MMPL family |
| 5103 | PF00490 | Delta-aminolevulinic acid dehydratase |
| 5100 | PF08668 | HDOD domain |
| 5100 | PF00216 | Bacterial DNA-binding protein |
| 5096 | PF01261 | Xylose isomerase-like TIM barrel |
| 5078 | PF13302 | Acetyltransferase (GNAT) domain |
| 5064 | PF00675 | Insulinase (Peptidase family M16) |
| 5060 | PF13537 | Glutamine amidotransferase domain |
| 5053 | PF12831 | FAD dependent oxidoreductase |
| 5040 | PF02784 | Pyridoxal-dependent decarboxylase, pyridoxal binding domain |
| 5040 | PF00346 | Respiratory-chain NADH dehydrogenase, 49 Kd subunit |
| 5017 | PF01968 | Hydantoinase/oxoprolinase |
| 5002 | PF08352 | Oligopeptide/dipeptide transporter, C-terminal region |
| 5000 | PF00370 | FGGY family of carbohydrate kinases, N-terminal domain |
| 4982 | PF01479 | S4 domain |
| 4977 | PF00773 | RNB domain |
| 4970 | PF02562 | PhoH-like protein |
| 4969 | PF01168 | Alanine racemase, N-terminal domain |
| 4957 | PF02880 | Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III |
| 4953 | PF01882 | Protein of unknown function DUF58 |
| 4942 | PF02812 | Glu/Leu/Phe/Val dehydrogenase, dimerisation domain |
| 4930 | PF19289 | PmbA/TldA metallopeptidase C-terminal domain |
| 4920 | PF00389 | D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain |
| 4914 | PF13570 | PQQ-like domain |
| 4912 | PF00204 | DNA gyrase B |
| 4909 | PF00872 | Transposase, Mutator family |
| 4909 | PF00574 | Clp protease |
| 4908 | PF01300 | Telomere recombination |
| 4882 | PF05721 | Phytanoyl-CoA dioxygenase (PhyH) |
| 4872 | PF05221 | S-adenosyl-L-homocysteine hydrolase |
| 4868 | PF01409 | tRNA synthetases class II core domain (F) |
| 4868 | PF00156 | Phosphoribosyl transferase domain |
| 4860 | PF01964 | Radical SAM ThiC family |
| 4845 | PF00929 | Exonuclease |
| 4830 | PF07631 | Protein of unknown function (DUF1592) |
| 4825 | PF01512 | Respiratory-chain NADH dehydrogenase 51 Kd subunit |
| 4816 | PF03023 | Lipid II flippase MurJ |
| 4816 | PF01751 | Toprim domain |
| 4809 | PF04820 | Tryptophan halogenase |
| 4796 | PF00962 | Adenosine deaminase |
| 4789 | PF00702 | haloacid dehalogenase-like hydrolase |
| 4761 | PF01507 | Phosphoadenosine phosphosulfate reductase family |
| 4740 | PF07593 | ASPIC and UnbV |
| 4737 | PF02668 | Taurine catabolism dioxygenase TauD, TfdA family |
| 4728 | PF03160 | Calx-beta domain |
| 4691 | PF17820 | PDZ domain |
| 4652 | PF08811 | Protein of unknown function (DUF1800) |
| 4649 | PF01795 | MraW methylase family |
| 4648 | PF02540 | NAD synthase |
| 4645 | PF00343 | Carbohydrate phosphorylase |
| 4643 | PF00185 | Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain |
| 4640 | PF03144 | Elongation factor Tu domain 2 |
| 4635 | PF07885 | Ion channel |
| 4629 | PF01070 | FMN-dependent dehydrogenase |
| 4626 | PF01663 | Type I phosphodiesterase / nucleotide pyrophosphatase |
| 4624 | PF03129 | Anticodon binding domain |
| 4621 | PF00591 | Glycosyl transferase family, a/b domain |
| 4588 | PF03739 | Lipopolysaccharide export system permease LptF/LptG |
| 4586 | PF02910 | Fumarate reductase flavoprotein C-term |
| 4584 | PF01434 | Peptidase family M41 |
| 4582 | PF13177 | DNA polymerase III, delta subunit |
| 4575 | PF00472 | RF-1 domain |
| 4572 | PF02080 | TrkA-C domain |
| 4545 | PF03150 | Di-haem cytochrome c peroxidase |
| 4544 | PF01066 | CDP-alcohol phosphatidyltransferase |
| 4540 | PF05345 | Putative Ig domain |
| 4539 | PF10502 | Signal peptidase, peptidase S26 |
| 4537 | PF07883 | Cupin domain |
| 4533 | PF01595 | Cyclin M transmembrane N-terminal domain |
| 4518 | PF00590 | Tetrapyrrole (Corrin/Porphyrin) Methylases |
| 4517 | PF00984 | UDP-glucose/GDP-mannose dehydrogenase family, central domain |
| 4509 | PF00308 | Bacterial dnaA protein |
| 4496 | PF01037 | Lrp/AsnC ligand binding domain |
| 4495 | PF00871 | Acetokinase family |
| 4490 | PF01578 | Cytochrome C assembly protein |
| 4489 | PF00805 | Pentapeptide repeats (8 copies) |
| 4480 | PF02092 | Glycyl-tRNA synthetase beta subunit |
| 4476 | PF02548 | Ketopantoate hydroxymethyltransferase |
| 4473 | PF00226 | DnaJ domain |
| 4466 | PF01699 | Sodium/calcium exchanger protein |
| 4463 | PF00860 | Permease family |
| 4457 | PF01103 | Omp85 superfamily domain |
| 4443 | PF01433 | Peptidase family M1 domain |
| 4435 | PF01925 | Sulfite exporter TauE/SafE |
| 4424 | PF00121 | Triosephosphate isomerase |
| 4422 | PF01761 | 3-dehydroquinate synthase |
| 4418 | PF01180 | Dihydroorotate dehydrogenase |
| 4414 | PF08282 | haloacid dehalogenase-like hydrolase |
| 4409 | PF04551 | GcpE protein |
| 4401 | PF11376 | Protein of unknown function (DUF3179) |
| 4401 | PF04879 | Molybdopterin oxidoreductase Fe4S4 domain |
| 4399 | PF05199 | GMC oxidoreductase |
| 4399 | PF01970 | Tripartite tricarboxylate transporter TctA family |
| 4383 | PF00762 | Ferrochelatase |
| 4377 | PF02901 | Pyruvate formate lyase-like |
| 4375 | PF01695 | IstB-like ATP binding protein |
| 4364 | PF01545 | Cation efflux family |
| 4359 | PF08238 | Sel1 repeat |
| 4342 | PF01594 | AI-2E family transporter |
| 4323 | PF00318 | Ribosomal protein S2 |
| 4316 | PF07589 | PEP-CTERM motif |
| 4305 | PF02965 | Vitamin B12 dependent methionine synthase, activation domain |
| 4304 | PF00899 | ThiF family |
| 4301 | PF04539 | Sigma-70 region 3 |
| 4299 | PF02785 | Biotin carboxylase C-terminal domain |
| 4298 | PF07244 | Surface antigen variable number repeat |
| 4291 | PF00728 | Glycosyl hydrolase family 20, catalytic domain |
| 4284 | PF03279 | Bacterial lipid A biosynthesis acyltransferase |
| 4281 | PF01738 | Dienelactone hydrolase family |
| 4279 | PF04069 | Substrate binding domain of ABC-type glycine betaine transport system |
| 4260 | PF00083 | Sugar (and other) transporter |
| 4257 | PF13487 | HD domain |
| 4250 | PF01715 | IPP transferase |
| 4243 | PF00834 | Ribulose-phosphate 3 epimerase family |
| 4232 | PF02386 | Cation transport protein |
| 4229 | PF00231 | ATP synthase |
| 4223 | PF03710 | Glutamate-ammonia ligase adenylyltransferase |
| 4221 | PF01144 | Coenzyme A transferase |
| 4216 | PF00953 | Glycosyl transferase family 4 |
| 4213 | PF00149 | Calcineurin-like phosphoesterase |
| 4202 | PF01734 | Patatin-like phospholipase |
| 4201 | PF00669 | Bacterial flagellin N-terminal helical region |
| 4199 | PF03007 | Wax ester synthase-like Acyl-CoA acyltransferase domain |
| 4197 | PF12146 | Serine aminopeptidase, S33 |
| 4194 | PF17863 | AAA lid domain |
| 4194 | PF12804 | MobA-like NTP transferase domain |
| 4190 | PF00941 | FAD binding domain in molybdopterin dehydrogenase |
| 4169 | PF04998 | RNA polymerase Rpb1, domain 5 |
| 4162 | PF03143 | Elongation factor Tu C-terminal domain |
| 4158 | PF01259 | SAICAR synthetase |
| 4146 | PF01243 | Pyridoxamine 5'-phosphate oxidase |
| 4137 | PF00232 | Glycosyl hydrolase family 1 |
| 4132 | PF03600 | Citrate transporter |
| 4127 | PF02469 | Fasciclin domain |
| 4103 | PF04986 | Putative transposase |
| 4089 | PF01522 | Polysaccharide deacetylase |
| 4077 | PF01676 | Metalloenzyme superfamily |
| 4071 | PF12770 | CHAT domain |
| 4070 | PF13247 | 4Fe-4S dicluster domain |
| 4066 | PF13417 | Glutathione S-transferase, N-terminal domain |
| 4050 | PF13585 | CHU_C Type IX secretion signal domain |
| 4050 | PF01584 | CheW-like domain |
| 4048 | PF10459 | Peptidase S46 |
| 4041 | PF00926 | 3,4-dihydroxy-2-butanone 4-phosphate synthase |
| 4030 | PF01790 | Prolipoprotein diacylglyceryl transferase |
| 4027 | PF03308 | Methylmalonyl Co-A mutase-associated GTPase MeaB |
| 4023 | PF00694 | Aconitase C-terminal domain |
| 4022 | PF01609 | Transposase DDE domain |
| 4022 | PF01209 | ubiE/COQ5 methyltransferase family |
| 4017 | PF00175 | Oxidoreductase NAD-binding domain |
| 4008 | PF05222 | Alanine dehydrogenase/PNT, N-terminal domain |
| 4005 | PF02934 | GatB/GatE catalytic domain |
| 4001 | PF04851 | Type III restriction enzyme, res subunit |
| 4000 | PF03331 | UDP-3-O-acyl N-acetylglycosamine deacetylase |
| 3994 | PF00543 | Nitrogen regulatory protein P-II |
| 3988 | PF00925 | GTP cyclohydrolase II |
| 3982 | PF13519 | von Willebrand factor type A domain |
| 3982 | PF00313 | 'Cold-shock' DNA-binding domain |
| 3972 | PF00939 | Sodium:sulfate symporter transmembrane region |
| 3970 | PF07556 | Protein of unknown function (DUF1538) |
| 3957 | PF01255 | Putative undecaprenyl diphosphate synthase |
| 3953 | PF00923 | Transaldolase/Fructose-6-phosphate aldolase |
| 3952 | PF13442 | Cytochrome C oxidase, cbb3-type, subunit III |
| 3949 | PF02569 | Pantoate-beta-alanine ligase |
| 3939 | PF02384 | N-6 DNA Methylase |
| 3936 | PF00393 | 6-phosphogluconate dehydrogenase, C-terminal domain |
| 3933 | PF12848 | ABC transporter |
| 3925 | PF02401 | LytB protein |
| 3923 | PF05157 | Type II secretion system (T2SS), protein E, N-terminal domain |
| 3923 | PF00756 | Putative esterase |
| 3919 | PF05593 | RHS Repeat |
| 3917 | PF03949 | Malic enzyme, NAD binding domain |
| 3916 | PF02781 | Glucose-6-phosphate dehydrogenase, C-terminal domain |
| 3916 | PF00391 | PEP-utilising enzyme, mobile domain |
| 3909 | PF03054 | tRNA methyl transferase HUP domain |
| 3903 | PF02684 | Lipid-A-disaccharide synthetase |
| 3901 | PF00383 | Cytidine and deoxycytidylate deaminase zinc-binding region |
| 3893 | PF13180 | PDZ domain |
| 3890 | PF02874 | ATP synthase alpha/beta family, beta-barrel domain |
| 3888 | PF02811 | PHP domain |
| 3885 | PF03009 | Glycerophosphoryl diester phosphodiesterase family |
| 3881 | PF04997 | RNA polymerase Rpb1, domain 1 |
| 3877 | PF13292 | 1-deoxy-D-xylulose-5-phosphate synthase |
| 3876 | PF03486 | HI0933-like protein |
| 3864 | PF01467 | Cytidylyltransferase-like |
| 3861 | PF08448 | PAS fold |
| 3860 | PF02445 | Quinolinate synthetase A protein |
| 3855 | PF00817 | impB/mucB/samB family |
| 3851 | PF16327 | Cytochrome c-type biogenesis protein CcmF C-terminal |
| 3841 | PF02543 | Carbamoyltransferase N-terminus |
| 3836 | PF00488 | MutS domain V |
| 3832 | PF00239 | Resolvase, N terminal domain |
| 3831 | PF17871 | AAA lid domain |
| 3829 | PF01799 | [2Fe-2S] binding domain |
| 3822 | PF03606 | C4-dicarboxylate anaerobic carrier |
| 3821 | PF14492 | Elongation Factor G, domain III |
| 3820 | PF01116 | Fructose-bisphosphate aldolase class-II |
| 3817 | PF01012 | Electron transfer flavoprotein domain |
| 3796 | PF01583 | Adenylylsulphate kinase |
| 3794 | PF02545 | Maf-like protein |
| 3793 | PF00209 | Sodium:neurotransmitter symporter family |
| 3779 | PF13188 | PAS domain |
| 3773 | PF02517 | Type II CAAX prenyl endopeptidase Rce1-like |
| 3773 | PF00902 | Sec-independent protein translocase protein (TatC) |
| 3770 | PF02774 | Semialdehyde dehydrogenase, dimerisation domain |
| 3766 | PF00303 | Thymidylate synthase |
| 3757 | PF00390 | Malic enzyme, N-terminal domain |
| 3748 | PF01580 | FtsK/SpoIIIE family |
| 3744 | PF01612 | 3'-5' exonuclease |
| 3739 | PF07977 | FabA-like domain |
| 3728 | PF02219 | Methylenetetrahydrofolate reductase |
| 3720 | PF10531 | SLBB domain |
| 3718 | PF01061 | ABC-2 type transporter |
| 3706 | PF01136 | Peptidase family U32 |
| 3704 | PF13091 | PLD-like domain |
| 3704 | PF02861 | Clp amino terminal domain, pathogenicity island component |
| 3704 | PF01327 | Polypeptide deformylase |
| 3693 | PF07662 | Na+ dependent nucleoside transporter C-terminus |
| 3692 | PF08534 | Redoxin |
| 3685 | PF00654 | Voltage gated chloride channel |
| 3681 | PF01384 | Phosphate transporter family |
| 3677 | PF00290 | Tryptophan synthase alpha chain |
| 3664 | PF08541 | 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal |
| 3664 | PF01709 | Transcriptional regulator |
| 3654 | PF06934 | Fatty acid cis/trans isomerase (CTI) |
| 3646 | PF00850 | Histone deacetylase domain |
| 3643 | PF12704 | MacB-like periplasmic core domain |
| 3642 | PF08442 | ATP-grasp domain |
| 3627 | PF02782 | FGGY family of carbohydrate kinases, C-terminal domain |
| 3620 | PF01758 | Sodium Bile acid symporter family |
| 3620 | PF00930 | Dipeptidyl peptidase IV (DPP IV) N-terminal region |
| 3593 | PF01225 | Mur ligase family, catalytic domain |
| 3592 | PF03740 | Pyridoxal phosphate biosynthesis protein PdxJ |
| 3587 | PF00596 | Class II Aldolase and Adducin N-terminal domain |
| 3580 | PF13507 | CobB/CobQ-like glutamine amidotransferase domain |
| 3577 | PF00750 | tRNA synthetases class I (R) |
| 3573 | PF04290 | Tripartite ATP-independent periplasmic transporters, DctQ component |
| 3565 | PF16868 | NMT1-like family |
| 3560 | PF01527 | Transposase |
| 3560 | PF00742 | Homoserine dehydrogenase |
| 3558 | PF03702 | Anhydro-N-acetylmuramic acid kinase |
| 3557 | PF11898 | Domain of unknown function (DUF3418) |
| 3543 | PF13602 | Zinc-binding dehydrogenase |
| 3541 | PF01071 | Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain |
| 3540 | PF01315 | Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain |
| 3533 | PF01078 | Magnesium chelatase, subunit ChlI |
| 3526 | PF02739 | 5'-3' exonuclease, N-terminal resolvase-like domain |
| 3525 | PF13374 | Tetratricopeptide repeat |
| 3522 | PF02541 | Ppx/GppA phosphatase family |
| 3521 | PF07627 | Protein of unknown function (DUF1588) |
| 3508 | PF08309 | LVIVD repeat |
| 3506 | PF01436 | NHL repeat |
| 3499 | PF02673 | Bacitracin resistance protein BacA |
| 3493 | PF00089 | Trypsin |
| 3490 | PF05496 | Holliday junction DNA helicase RuvB P-loop domain |
| 3484 | PF08545 | 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III |
| 3481 | PF01227 | GTP cyclohydrolase I |
| 3479 | PF08335 | GlnD PII-uridylyltransferase |
| 3477 | PF13603 | Leucyl-tRNA synthetase, Domain 2 |
| 3475 | PF13439 | Glycosyltransferase Family 4 |
| 3475 | PF03717 | Penicillin-binding Protein dimerisation domain |
| 3474 | PF00044 | Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain |
| 3466 | PF04321 | RmlD substrate binding domain |
| 3459 | PF03544 | Gram-negative bacterial TonB protein C-terminal |
| 3448 | PF00359 | Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 |
| 3441 | PF05378 | Hydantoinase/oxoprolinase N-terminal region |
| 3441 | PF02690 | Na+/Pi-cotransporter |
| 3432 | PF00356 | Bacterial regulatory proteins, lacI family |
| 3432 | PF00183 | Hsp90 protein |
| 3432 | PF00140 | Sigma-70 factor, region 1.2 |
| 3430 | PF00218 | Indole-3-glycerol phosphate synthase |
| 3425 | PF07859 | alpha/beta hydrolase fold |
| 3425 | PF07516 | SecA Wing and Scaffold domain |
| 3422 | PF17757 | UvrB interaction domain |
| 3420 | PF01118 | Semialdehyde dehydrogenase, NAD binding domain |
| 3419 | PF20434 | BD-FAE |
| 3416 | PF03616 | Sodium/glutamate symporter |
| 3413 | PF04127 | DNA / pantothenate metabolism flavoprotein |
| 3403 | PF01263 | Aldose 1-epimerase |
| 3385 | PF01914 | MarC family integral membrane protein |
| 3384 | PF00768 | D-alanyl-D-alanine carboxypeptidase |
| 3382 | PF01312 | FlhB HrpN YscU SpaS Family |
| 3380 | PF05114 | Protein of unknown function (DUF692) |
| 3356 | PF07478 | D-ala D-ala ligase C-terminus |
| 3353 | PF01556 | DnaJ C terminal domain |
| 3352 | PF08298 | PrkA AAA domain |
| 3350 | PF01593 | Flavin containing amine oxidoreductase |
| 3338 | PF00011 | Hsp20/alpha crystallin family |
| 3336 | PF01075 | Glycosyltransferase family 9 (heptosyltransferase) |
| 3326 | PF01138 | 3' exoribonuclease family, domain 1 |
| 3325 | PF02492 | CobW/HypB/UreG, nucleotide-binding domain |
| 3324 | PF02504 | Fatty acid synthesis protein |
| 3322 | PF02446 | 4-alpha-glucanotransferase |
| 3322 | PF00889 | Elongation factor TS |
| 3321 | PF02441 | Flavoprotein |
| 3320 | PF03734 | L,D-transpeptidase catalytic domain |
| 3307 | PF07714 | Protein tyrosine and serine/threonine kinase |
| 3303 | PF08450 | SMP-30/Gluconolactonase/LRE-like region |
| 3300 | PF11617 | Putative metal-binding motif |
| 3299 | PF00919 | Uncharacterized protein family UPF0004 |
| 3292 | PF03483 | B3/4 domain |
| 3292 | PF02754 | Cysteine-rich domain |
| 3290 | PF13428 | Tetratricopeptide repeat |
| 3281 | PF03352 | Methyladenine glycosylase |
| 3280 | PF02423 | Ornithine cyclodeaminase/mu-crystallin family |
| 3280 | PF01619 | Proline dehydrogenase |
| 3271 | PF02142 | MGS-like domain |
| 3268 | PF09317 | Acyl-CoA dehydrogenase, C-terminal, bacterial type |
| 3268 | PF02646 | RmuC family |
| 3261 | PF01379 | Porphobilinogen deaminase, dipyromethane cofactor binding domain |
| 3260 | PF02882 | Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain |
| 3258 | PF02348 | Cytidylyltransferase |
| 3250 | PF01746 | tRNA (Guanine-1)-methyltransferase |
| 3245 | PF12706 | Beta-lactamase superfamily domain |
| 3244 | PF08669 | Glycine cleavage T-protein C-terminal barrel domain |
| 3241 | PF14691 | Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster |
| 3241 | PF03453 | MoeA N-terminal region (domain I and II) |
| 3226 | PF13328 | HD domain |
| 3226 | PF04293 | SpoVR like protein |
| 3219 | PF13715 | CarboxypepD_reg-like domain |
| 3219 | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) |
| 3218 | PF02074 | Carboxypeptidase Taq (M32) metallopeptidase |
| 3216 | PF01297 | Zinc-uptake complex component A periplasmic |
| 3214 | PF13847 | Methyltransferase domain |
| 3210 | PF01112 | Asparaginase |
| 3205 | PF01175 | Urocanase Rossmann-like domain |
| 3203 | PF07991 | Acetohydroxy acid isomeroreductase, NADPH-binding domain |
| 3195 | PF04166 | Pyridoxal phosphate biosynthetic protein PdxA |
| 3195 | PF01139 | tRNA-splicing ligase RtcB |
| 3184 | PF17131 | Outer membrane lipoprotein-sorting protein |
| 3183 | PF00374 | Nickel-dependent hydrogenase |
| 3179 | PF13522 | Glutamine amidotransferase domain |
| 3176 | PF00487 | Fatty acid desaturase |
| 3170 | PF17831 | Pyruvate dehydrogenase E1 component middle domain |
| 3169 | PF02627 | Carboxymuconolactone decarboxylase family |
| 3168 | PF07729 | FCD domain |
| 3162 | PF17760 | UvrA interaction domain |
| 3161 | PF02481 | DNA recombination-mediator protein A |
| 3160 | PF13242 | HAD-hyrolase-like |
| 3156 | PF07238 | PilZ domain |
| 3149 | PF01641 | SelR domain |
| 3142 | PF04952 | Succinylglutamate desuccinylase / Aspartoacylase family |
| 3141 | PF06325 | Ribosomal protein L11 methyltransferase (PrmA) |
| 3140 | PF06429 | Flagellar basal body rod FlgEFG protein C-terminal |
| 3138 | PF00177 | Ribosomal protein S7p/S5e |
| 3135 | PF02113 | D-Ala-D-Ala carboxypeptidase 3 (S13) family |
| 3134 | PF01743 | Poly A polymerase head domain |
| 3131 | PF02119 | Flagellar P-ring protein |
| 3127 | PF01323 | DSBA-like thioredoxin domain |
| 3121 | PF06742 | Protein of unknown function (DUF1214) |
| 3102 | PF13549 | ATP-grasp domain |
| 3101 | PF17392 | Urocanase C-terminal domain |
| 3099 | PF01451 | Low molecular weight phosphotyrosine protein phosphatase |
| 3091 | PF13412 | Winged helix-turn-helix DNA-binding |
| 3084 | PF16861 | Carbamoyltransferase C-terminus |
| 3084 | PF02606 | Tetraacyldisaccharide-1-P 4'-kinase |
| 3084 | PF00213 | ATP synthase delta (OSCP) subunit |
| 3077 | PF03772 | Competence protein |
| 3076 | PF06974 | WS/DGAT C-terminal domain |
| 3075 | PF05175 | Methyltransferase small domain |
| 3074 | PF00677 | Lumazine binding domain |
| 3072 | PF12796 | Ankyrin repeats (3 copies) |
| 3063 | PF02879 | Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II |
| 3061 | PF01725 | Ham1 family |
| 3056 | PF13411 | MerR HTH family regulatory protein |
| 3053 | PF13620 | Carboxypeptidase regulatory-like domain |
| 3052 | PF07971 | Glycosyl hydrolase family 92 |
| 3044 | PF01558 | Pyruvate ferredoxin/flavodoxin oxidoreductase |
| 3043 | PF00210 | Ferritin-like domain |
| 3038 | PF06450 | Bacterial Na+/H+ antiporter B (NhaB) |
| 3037 | PF00166 | Chaperonin 10 Kd subunit |
| 3035 | PF01520 | N-acetylmuramoyl-L-alanine amidase |
| 3033 | PF02746 | Mandelate racemase / muconate lactonizing enzyme, N-terminal domain |
| 3033 | PF01654 | Cytochrome bd terminal oxidase subunit I |
| 3032 | PF03190 | Protein of unknown function, DUF255 |
| 3029 | PF13520 | Amino acid permease |
| 3027 | PF05896 | Na(+)-translocating NADH-quinone reductase subunit A (NQRA) |
| 3027 | PF00857 | Isochorismatase family |
| 3021 | PF18884 | Bacterial TSP3 repeat |
| 3020 | PF13406 | Transglycosylase SLT domain |
| 3020 | PF06537 | Di-haem oxidoreductase, putative peroxidase |
| 3020 | PF01148 | Cytidylyltransferase family |
| 3020 | PF00549 | CoA-ligase |
| 3019 | PF00436 | Single-strand binding protein family |
| 3018 | PF08459 | UvrC RNAse H endonuclease domain |
| 3018 | PF03313 | Serine dehydratase alpha chain |
| 3017 | PF05544 | Proline racemase |
| 3014 | PF00368 | Hydroxymethylglutaryl-coenzyme A reductase |
| 3012 | PF02899 | Phage integrase, N-terminal SAM-like domain |
| 3012 | PF01872 | RibD C-terminal domain |
| 3008 | PF02773 | S-adenosylmethionine synthetase, C-terminal domain |
| 3004 | PF14833 | NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase |
| 3004 | PF00174 | Oxidoreductase molybdopterin binding domain |
| 3003 | PF03977 | Na+-transporting oxaloacetate decarboxylase beta subunit |
| 3002 | PF04073 | Aminoacyl-tRNA editing domain |
| 2999 | PF00398 | Ribosomal RNA adenine dimethylase |
| 2989 | PF00460 | Flagella basal body rod protein |
| 2985 | PF03950 | tRNA synthetases class I (E and Q), anti-codon binding domain |
| 2983 | PF02146 | Sir2 family |
| 2982 | PF01081 | KDPG and KHG aldolase |
| 2981 | PF04116 | Fatty acid hydroxylase |
| 2979 | PF01493 | GXGXG motif |
| 2977 | PF04264 | YceI-like domain |
| 2974 | PF03222 | Tryptophan/tyrosine permease family |
| 2973 | PF03668 | P-loop ATPase protein family |
| 2973 | PF02096 | 60Kd inner membrane protein |
| 2966 | PF00462 | Glutaredoxin |
| 2961 | PF01022 | Bacterial regulatory protein, arsR family |
| 2959 | PF13616 | PPIC-type PPIASE domain |
| 2959 | PF01043 | SecA preprotein cross-linking domain |
| 2949 | PF04397 | LytTr DNA-binding domain |
| 2947 | PF01035 | 6-O-methylguanine DNA methyltransferase, DNA binding domain |
| 2946 | PF00119 | ATP synthase A chain |
| 2942 | PF13795 | HupE / UreJ protein |
| 2941 | PF02696 | Protein adenylyltransferase SelO |
| 2940 | PF01765 | Ribosome recycling factor |
| 2934 | PF00246 | Zinc carboxypeptidase |
| 2931 | PF01597 | Glycine cleavage H-protein |
| 2930 | PF03328 | HpcH/HpaI aldolase/citrate lyase family |
| 2928 | PF08323 | Starch synthase catalytic domain |
| 2926 | PF05690 | Thiazole biosynthesis protein ThiG |
| 2924 | PF02310 | B12 binding domain |
| 2923 | PF17759 | Phenylalanyl tRNA synthetase beta chain CLM domain |
| 2923 | PF01895 | PhoU domain |
| 2922 | PF01336 | OB-fold nucleic acid binding domain |