Publications
My scientific publications
2024
- Predicting microbial interactions with approaches based on flux balance analysis: an evaluation
- Establishing the ELIXIR Microbiome Community
2023
- A pile of pipelines: An overview of the bioinformatics software for metabarcoding data analyses
- metaGOflow: a workflow for the analysis of marine Genomic Observatories shotgun metagenomics data
- Geometric algorithms for sampling the flux space of metabolic networks
- Metabolic models of human gut microbiota: Advances and challenges
2022
- Deciphering the functional potential of a hypersaline swamp microbial mat community
- Automating the Curation Process of Historical Literature on Marine Biodiversity Using Text Mining: The DECO Workflow
- PREGO: A Literature and Data-Mining Resource to Associate Microorganisms, Biological Processes, and Environment Types
2021
- The Dark mAtteR iNvestigator (DARN) tool: getting to know the known unknowns in COI amplicon data
- The Santorini Volcanic Complex as a Valuable Source of Enzymes for Bioenergy
