Phen models supported

Phen traits have been annotated to all representative GTDB genomes. Here are the corresponding abbreviations’ descriptions. Each function is referring to the species under study (node).

Abbreviation	Description
`NOB`	part of the clade of nitrite-oxidizing bacteria
`T3SS`	expresses a Type III secretion system
`T6SS`	expresses a Type VI secretion system
`aSaccharolytic`	has an asaccharolytic lifestyle
`aceticAcid`	produces acetic acid
`aob`	is part of the clade of ammonia-oxidizing bacteria
`autoCo2`	is capable of growth with CO2 as sole carbon source
`butanol`	produces butanol
`butyricAcid`	produces butyric acid
`dGlucose`	utilizes D-glucose
`dLacticAcid`	produces D lactic acid
`ethanol`	species producing ethanol
`fermentative`	has a Fermentative lifestyle
`fixingN2`	capable of fixing N2
`formicAcid`	producing formic_acid
`gtdbId`*	GTDB id of the genome used for this analysis
`halophilic`	halophilic lifestyle
`hydrogen`	producing hydrogen
`indole`	producing indole
`isobutyricAcid`	producing isobutyric_acid
`isovalericAcid`	producing isovaleric_acid
`lLacticAcid`	producing L_lactic_acid
`methanotroph`	capable of growth with methane as the sole carbon source
`nonFermentative`	has a nonfermentative lifestyle
`phototrophy`	is able of phototrophy
`psychrophilic`	species has a psychrophilic lifestyle
`rAcetoin`	is producing R_acetoin
`saccharolytic`	has a Saccharolytic lifestyle
`succinicAcid`	is producing succinic_acid
`sulfateReducer`	is capable of using sulfate as terminal electron acceptor
`symbiont`	has an obligate intracellular lifestyle
`thermophilic`	species has a thermophilic lifestyle

* not returned by a Phen model